Detailed information of deep learning profile BP000733.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000733.1
Cell line/tissue: A549
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BPY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 0.07 0.05 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.03 0.06 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.01 0.00 0.00 0.00 0.00 0.09 0.07 0.00 0.00 0.02 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 ]

Frequency matrix

       
A [ 2693 2796 2716 2588 2676 2680 2655 2584 2782 2734 2587 2598 2656 2467 2622 2646 2582 2576 2484 2572 2646 2267 3140 3601 4181 1129 2748 3 38 12539 12003 2549 1430 2700 3323 2816 2565 2136 2373 2443 2411 2514 2629 2509 2573 2560 2437 2521 2553 2362 ]
C [ 4167 4125 3964 4160 3946 3978 4082 4106 4110 4118 4150 4050 3932 4090 4278 4190 4365 4139 4090 4415 4292 4165 3738 3744 3143 8827 10238 7 123 302 414 1591 3817 2626 3435 4668 3219 4068 4440 3991 4360 4174 3825 4046 4007 3905 4108 4131 4012 4072 ]
G [ 4185 4164 4250 4307 4398 4373 4336 4384 4171 4247 4363 4325 4329 4441 4147 4382 4124 4384 4447 4095 4116 4727 4725 3987 4743 3042 321 13358 13106 363 276 8750 1819 6004 5071 3441 4805 4422 3869 4218 4155 4405 4451 4478 4491 4495 4414 4154 4378 4490 ]
T [ 2327 2287 2442 2317 2352 2341 2299 2298 2309 2273 2272 2399 2455 2374 2325 2154 2301 2273 2351 2290 2318 2213 1769 2040 1305 374 65 4 105 168 679 482 6306 2042 1543 2447 2783 2746 2690 2720 2446 2279 2467 2339 2301 2412 2413 2566 2429 2448 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.01 -0.01 -0.05 -0.04 0.07 0.05 0.01 -0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.03 0.07 -0.02 -0.03 -0.03 -0.01 -0.00 0.01 -0.00 0.00 ]
G [ 0.01 0.01 0.00 0.01 0.01 -0.01 0.09 0.07 -0.02 -0.04 0.03 -0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.04 -0.06 -0.06 -0.03 -0.01 0.01 -0.03 0.02 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3523

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 749

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 619

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 144

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages