JASPAR - GABPA - BP000733.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GABPA
Model ID:	BP000733.1
Cell line/tissue:	A549
Class:	Tryptophan cluster factors
Family:	Ets-related
JASPAR ID:	MA0062.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q06546
Source:	ENCSR000BPY
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 13372

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.01	-0.00	0.00	-0.00	-0.00	0.07	0.05	0.00	-0.00	0.00	0.00	]
C [	0.00	0.00	0.00	0.03	0.06	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	]
G [	0.01	0.00	0.00	0.00	0.00	0.09	0.07	0.00	0.00	0.02	-0.00	0.01	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.02	-0.00	-0.00	]

Frequency matrix

A [	2693	2796	2716	2588	2676	2680	2655	2584	2782	2734	2587	2598	2656	2467	2622	2646	2582	2576	2484	2572	2646	2267	3140	3601	4181	1129	2748	3	38	12539	12003	2549	1430	2700	3323	2816	2565	2136	2373	2443	2411	2514	2629	2509	2573	2560	2437	2521	2553	2362	]
C [	4167	4125	3964	4160	3946	3978	4082	4106	4110	4118	4150	4050	3932	4090	4278	4190	4365	4139	4090	4415	4292	4165	3738	3744	3143	8827	10238	7	123	302	414	1591	3817	2626	3435	4668	3219	4068	4440	3991	4360	4174	3825	4046	4007	3905	4108	4131	4012	4072	]
G [	4185	4164	4250	4307	4398	4373	4336	4384	4171	4247	4363	4325	4329	4441	4147	4382	4124	4384	4447	4095	4116	4727	4725	3987	4743	3042	321	13358	13106	363	276	8750	1819	6004	5071	3441	4805	4422	3869	4218	4155	4405	4451	4478	4491	4495	4414	4154	4378	4490	]
T [	2327	2287	2442	2317	2352	2341	2299	2298	2309	2273	2272	2399	2455	2374	2325	2154	2301	2273	2351	2290	2318	2213	1769	2040	1305	374	65	4	105	168	679	482	6306	2042	1543	2447	2783	2746	2690	2720	2446	2279	2467	2339	2301	2412	2413	2566	2429	2448	]

Hypothetical CWM

A [	-0.01	-0.01	0.00	0.01	-0.01	-0.01	-0.05	-0.04	0.07	0.05	0.01	-0.01	0.00	0.00	]
C [	0.01	0.01	0.01	-0.00	0.03	0.07	-0.02	-0.03	-0.03	-0.01	-0.00	0.01	-0.00	0.00	]
G [	0.01	0.01	0.00	0.01	0.01	-0.01	0.09	0.07	-0.02	-0.04	0.03	-0.01	0.01	0.01	]
T [	-0.00	-0.01	-0.01	-0.02	-0.04	-0.06	-0.06	-0.03	-0.01	0.01	-0.03	0.02	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3523

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 749

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 619

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 144

CWM

PFM

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000740.1	GABPA	ENCSR290MUH	K562	Homo sapiens	MA0062.4
BP000741.1	GABPA	ENCSR331HPA	GM12878	Homo sapiens	MA0062.4
BP000742.1	GABPA	ENCSR350ORK	liver	Homo sapiens	MA0062.4