Detailed information of deep learning profile BP000732.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000732.1
Cell line/tissue: K562
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BLO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.09 0.06 0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.04 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.12 0.10 0.00 0.00 0.03 -0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 2109 2117 2133 2149 2141 2251 2173 2065 2079 2068 1969 2071 2044 1987 2034 1992 1974 2047 1717 2592 2951 3858 701 2460 9 6 10797 10039 1738 849 1932 2603 1883 1748 1723 1907 1952 1786 1916 2090 1919 2097 2006 1962 1975 2007 1901 1998 2062 2081 ]
C [ 3397 3419 3366 3363 3436 3387 3345 3428 3266 3303 3419 3497 3450 3619 3442 3406 3779 3580 3475 3271 3041 2270 7969 8251 4 3 28 160 905 3037 2147 2850 3974 2826 3457 3595 3333 3521 3487 3181 3357 3333 3377 3482 3402 3312 3280 3358 3197 3243 ]
G [ 3584 3608 3581 3611 3518 3480 3610 3574 3613 3534 3591 3383 3674 3506 3559 3765 3363 3428 4035 3610 3495 3944 2079 152 10863 10861 33 57 8174 1255 5317 4320 3178 4079 3655 3376 3579 3628 3755 3747 3782 3769 3635 3632 3555 3640 3812 3660 3765 3711 ]
T [ 1793 1739 1803 1760 1788 1765 1755 1816 1925 1978 1904 1932 1715 1771 1848 1720 1767 1828 1656 1410 1396 811 134 20 7 13 25 627 66 5742 1487 1110 1848 2230 2048 2005 2019 1948 1725 1865 1825 1684 1865 1807 1951 1924 1890 1867 1859 1848 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 0.02 -0.00 0.00 -0.05 -0.05 0.09 0.06 0.02 -0.02 0.01 0.00 -0.01 ]
C [ 0.02 0.02 0.01 0.00 0.05 0.09 -0.03 -0.03 -0.03 0.00 0.01 0.02 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.01 -0.01 0.12 0.10 -0.03 -0.05 0.04 0.00 0.02 0.01 0.01 ]
T [ 0.00 -0.01 -0.01 -0.02 -0.05 -0.08 -0.07 -0.05 -0.02 0.02 -0.05 0.04 0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3773

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 441

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 384

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 323

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages