JASPAR - GABPA - BP000732.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GABPA
Model ID:	BP000732.1
Cell line/tissue:	K562
Class:	Tryptophan cluster factors
Family:	Ets-related
JASPAR ID:	MA0062.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q06546
Source:	ENCSR000BLO
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 10883

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	0.02	-0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.01	0.01	-0.00	0.03	0.00	0.00	0.10	0.12	0.00	0.00	0.01	0.00	0.00	0.00	]
G [	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.07	0.04	-0.00	0.00	0.01	0.01	]
T [	-0.00	0.00	0.00	-0.00	0.00	0.06	0.09	0.00	0.00	-0.00	-0.00	0.01	0.00	-0.00	-0.00	]

Frequency matrix

A [	1848	1859	1867	1890	1924	1951	1807	1865	1684	1825	1865	1725	1948	2019	2005	2048	2230	1848	1110	1487	5742	66	627	25	13	7	20	134	811	1396	1410	1656	1828	1767	1720	1848	1771	1715	1932	1904	1978	1925	1816	1755	1765	1788	1760	1803	1739	1793	]
C [	3711	3765	3660	3812	3640	3555	3632	3635	3769	3782	3747	3755	3628	3579	3376	3655	4079	3178	4320	5317	1255	8174	57	33	10861	10863	152	2079	3944	3495	3610	4035	3428	3363	3765	3559	3506	3674	3383	3591	3534	3613	3574	3610	3480	3518	3611	3581	3608	3584	]
G [	3243	3197	3358	3280	3312	3402	3482	3377	3333	3357	3181	3487	3521	3333	3595	3457	2826	3974	2850	2147	3037	905	160	28	3	4	8251	7969	2270	3041	3271	3475	3580	3779	3406	3442	3619	3450	3497	3419	3303	3266	3428	3345	3387	3436	3363	3366	3419	3397	]
T [	2081	2062	1998	1901	2007	1975	1962	2006	2097	1919	2090	1916	1786	1952	1907	1723	1748	1883	2603	1932	849	1738	10039	10797	6	9	2460	701	3858	2951	2592	1717	2047	1974	1992	2034	1987	2044	2071	1969	2068	2079	2065	2173	2251	2141	2149	2133	2117	2109	]

Hypothetical CWM

A [	0.00	-0.01	0.00	0.04	-0.05	0.02	-0.02	-0.05	-0.07	-0.08	-0.05	-0.02	-0.01	-0.01	0.00	]
C [	0.01	0.01	0.02	0.00	0.04	-0.05	-0.03	0.10	0.12	-0.01	0.01	0.02	0.01	0.02	0.01	]
G [	0.02	0.02	0.01	0.02	0.01	0.00	-0.03	-0.03	-0.03	0.09	0.05	0.00	0.01	0.02	0.02	]
T [	-0.01	0.00	0.01	-0.02	0.02	0.06	0.09	-0.05	-0.05	0.00	-0.00	0.02	0.00	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3773

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 441

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 384

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 323

CWM

PFM

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000740.1	GABPA	ENCSR290MUH	K562	Homo sapiens	MA0062.4
BP000741.1	GABPA	ENCSR331HPA	GM12878	Homo sapiens	MA0062.4
BP000742.1	GABPA	ENCSR350ORK	liver	Homo sapiens	MA0062.4