Detailed information of deep learning profile BP000731.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000731.1
Cell line/tissue: HepG2
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BJK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.03 0.00 0.00 0.09 0.11 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.03 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.06 0.08 -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 1552 1513 1527 1560 1528 1557 1531 1485 1400 1480 1553 1437 1581 1671 1653 1623 1718 1529 922 1253 4505 121 347 66 35 3 33 167 794 1349 1167 1429 1558 1470 1483 1419 1418 1339 1476 1505 1604 1519 1389 1417 1395 1409 1439 1463 1450 1446 ]
C [ 2957 3082 3004 3076 2994 2897 2925 3033 2999 3052 2933 2953 2835 2903 2716 2944 3481 2436 3323 4109 1076 6397 68 51 8803 8865 161 1809 3328 2706 2972 3107 2712 2740 2988 2871 2832 3034 2780 2983 2858 2922 2963 2962 2842 2924 3029 2873 2954 2914 ]
G [ 2725 2611 2741 2735 2721 2822 2834 2738 2838 2765 2661 2938 2982 2755 3032 2927 2272 3285 2544 1849 2424 872 181 59 23 3 6752 6240 2103 2639 2671 2878 2975 3115 2792 2917 3015 2833 2951 2820 2732 2795 2823 2754 2805 2808 2701 2833 2738 2842 ]
T [ 1638 1666 1600 1501 1629 1596 1582 1616 1635 1575 1725 1544 1474 1543 1471 1378 1401 1622 2083 1661 867 1482 8276 8696 11 1 1926 656 2647 2178 2062 1458 1627 1547 1609 1665 1607 1666 1665 1564 1678 1636 1697 1739 1830 1731 1703 1703 1730 1670 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.00 0.03 -0.05 0.01 -0.01 -0.03 -0.06 -0.07 -0.05 -0.02 -0.01 -0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.01 0.04 -0.06 -0.03 0.09 0.11 -0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.00 0.00 -0.04 -0.04 -0.02 0.08 0.04 -0.00 0.01 0.01 0.01 ]
T [ -0.01 0.00 0.01 -0.02 0.01 0.06 0.08 -0.04 -0.07 -0.01 -0.00 0.02 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 873

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 267

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages