Detailed information of deep learning profile BP000731.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000731.1
Cell line/tissue: HepG2
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BJK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.08 0.06 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.03 0.06 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.11 0.09 0.00 0.00 0.03 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 ]

Frequency matrix

       
A [ 1670 1730 1703 1703 1731 1830 1739 1697 1636 1678 1564 1665 1666 1607 1665 1609 1547 1627 1458 2062 2178 2647 656 1926 1 11 8696 8276 1482 867 1661 2083 1622 1401 1378 1471 1543 1474 1544 1725 1575 1635 1616 1582 1596 1629 1501 1600 1666 1638 ]
C [ 2842 2738 2833 2701 2808 2805 2754 2823 2795 2732 2820 2951 2833 3015 2917 2792 3115 2975 2878 2671 2639 2103 6240 6752 3 23 59 181 872 2424 1849 2544 3285 2272 2927 3032 2755 2982 2938 2661 2765 2838 2738 2834 2822 2721 2735 2741 2611 2725 ]
G [ 2914 2954 2873 3029 2924 2842 2962 2963 2922 2858 2983 2780 3034 2832 2871 2988 2740 2712 3107 2972 2706 3328 1809 161 8865 8803 51 68 6397 1076 4109 3323 2436 3481 2944 2716 2903 2835 2953 2933 3052 2999 3033 2925 2897 2994 3076 3004 3082 2957 ]
T [ 1446 1450 1463 1439 1409 1395 1417 1389 1519 1604 1505 1476 1339 1418 1419 1483 1470 1558 1429 1167 1349 794 167 33 3 35 66 347 121 4505 1253 922 1529 1718 1623 1653 1671 1581 1437 1553 1480 1400 1485 1531 1557 1528 1560 1527 1513 1552 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.02 -0.00 -0.01 -0.07 -0.04 0.08 0.06 0.01 -0.02 0.01 0.00 -0.01 ]
C [ 0.01 0.01 0.01 -0.00 0.04 0.08 -0.02 -0.04 -0.04 0.00 0.00 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 -0.02 0.11 0.09 -0.03 -0.06 0.04 -0.01 0.01 0.01 0.00 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.05 -0.07 -0.06 -0.03 -0.01 0.01 -0.05 0.03 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 873

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 267

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages