Detailed information of deep learning profile BP000685.1

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This page shows detailed deep learning-derived predictions and motifs for CREB1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREB1
Model ID: BP000685.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0018.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P16220  
Source: ENCSR000BSO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 0.03 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 323 353 339 317 305 326 344 321 308 310 284 290 340 303 327 328 298 223 315 607 5 7 1289 0 931 13 54 1293 53 409 396 320 262 323 288 269 309 316 347 327 348 335 315 302 332 320 346 329 346 353 ]
C [ 330 362 374 351 369 380 348 313 371 383 380 409 404 383 367 348 367 486 233 200 24 18 3 1320 328 6 1255 8 471 424 270 423 380 354 392 347 370 366 373 374 365 352 361 399 371 361 364 392 339 315 ]
G [ 358 310 325 353 336 315 332 337 336 329 332 322 318 319 344 384 397 230 375 489 5 1188 9 6 5 10 10 20 192 199 410 292 341 340 357 359 349 353 310 362 294 335 307 321 302 310 306 299 332 334 ]
T [ 321 307 294 311 322 311 308 361 317 310 336 311 270 327 294 272 270 393 409 36 1298 119 31 6 68 1303 13 11 616 300 256 297 349 315 295 357 304 297 302 269 325 310 349 310 327 341 316 312 315 330 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 0.01 -0.02 -0.01 0.03 -0.03 0.00 -0.01 0.01 0.03 -0.01 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.00 0.02 -0.01 -0.02 0.04 -0.01 0.00 0.03 -0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.01 -0.02 0.03 -0.00 -0.01 0.05 -0.01 -0.01 0.01 0.00 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.00 -0.01 0.03 0.01 -0.00 0.00 -0.03 0.03 -0.01 -0.02 0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6734

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3572

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 905

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 592

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 116

CWM

PFM

     

HCWM

13 profiles found for the same TF (CREB1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000692.1 CREB1 ENCSR471WXT K562 Homo sapiens MA0018.5
BP000693.1 CREB1 ENCSR620DUQ MCF-7 Homo sapiens MA0018.5
BP000694.1 CREB1 ENCSR897JAS MCF-7 Homo sapiens MA0018.5
Showing 3 profiles of page 2 from 2 pages