Detailed information of deep learning profile BP000638.1

This page shows detailed deep learning-derived predictions and motifs for USF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000638.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BPV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.09 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.10 0.00 0.08 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.06 -0.00 0.10 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

A [ 1339 1124 1051 1162 1646 1393 1028 1038 1064 1028 1019 1352 1576 1388 1488 1092 1007 1253 1867 1072 123 14 5998 9 1817 84 9 1671 484 756 1712 1044 1357 1042 1073 1078 1492 1515 1271 1044 1241 1580 1745 1497 1278 1368 1271 1375 1319 1176 ]
C [ 1626 1887 1899 1888 1668 1457 1423 1381 1417 1910 2161 1965 1514 1638 1768 2014 1808 1354 913 575 762 6000 17 5277 283 104 17 1216 2896 2907 1653 2067 1758 2105 2219 1644 1426 1553 1842 2099 1930 1819 1549 1542 1755 1609 1675 1560 1515 1631 ]
G [ 1516 1526 1543 1720 1591 1471 1559 2185 2524 1937 1512 1541 1926 2014 1660 1651 1517 2192 2577 4242 311 12 12 238 3915 88 5986 2426 1097 1238 1566 1616 1728 1689 1432 1683 1937 1933 1779 1541 1628 1542 1621 1625 1883 1938 1900 1811 1997 1928 ]
T [ 1553 1497 1541 1264 1129 1713 2024 1430 1029 1159 1342 1176 1018 994 1118 1277 1702 1235 677 145 4838 8 7 510 19 5758 22 721 1557 1133 1103 1307 1191 1198 1310 1629 1179 1033 1142 1350 1235 1093 1119 1370 1118 1119 1188 1288 1203 1299 ]

Hypothetical CWM

A [ 0.00 -0.00 0.00 0.00 0.02 -0.02 -0.02 0.09 -0.07 0.02 -0.03 -0.04 0.04 -0.02 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 -0.01 0.01 0.10 -0.03 0.08 -0.03 0.01 -0.04 0.00 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 -0.00 -0.04 0.01 -0.02 0.08 -0.03 0.10 0.01 0.00 0.02 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.03 0.05 -0.04 -0.04 0.02 -0.07 0.07 -0.02 -0.01 0.02 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1482

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 446

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 78

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 43

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 27

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000642.1 USF1 ENCSR099FCQ HepG2 Homo sapiens MA0093.4
BP000643.1 USF1 ENCSR248QBT WTC11 Homo sapiens MA0093.4
BP000644.1 USF1 ENCSR787CHF K562 Homo sapiens MA0093.4
Showing 3 profiles of page 2 from 2 pages