Detailed information of deep learning profile BP000637.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000637.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 0.12 -0.00 0.00 -0.00 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.19 -0.00 0.07 0.00 0.00 0.00 -0.00 0.06 0.01 0.01 0.00 0.00 ]
G [ 0.01 0.01 0.03 -0.00 0.00 0.00 -0.00 0.15 -0.00 0.20 0.00 -0.00 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.02 0.00 0.14 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4196 4618 4091 4037 4130 4533 4120 3932 4334 5267 4685 4563 4150 4367 4043 4362 5152 2260 88 18305 62 302 75 3 12606 649 2833 4767 5005 4224 3990 3895 3896 4595 4844 4246 3944 4758 6204 5454 4275 4587 5112 4849 4944 4505 4427 4397 4856 4682 ]
C [ 5609 5209 5110 4956 5136 5031 5384 5877 5772 5173 4810 5450 5577 5042 4567 3966 3619 7129 19561 425 9124 112 83 16 2100 12915 8014 5814 5174 5229 5331 5926 5583 4723 4708 5762 7013 6260 4974 4750 4994 5288 4959 4967 4960 4798 4868 5160 4902 5101 ]
G [ 5253 4885 4669 5363 5725 5989 5465 4774 4582 5157 6237 5653 5155 5753 5776 8507 9334 3207 38 451 1084 19271 52 19662 4067 1551 2767 4164 5371 5894 5199 4871 4998 5760 6246 5693 4485 4541 4556 4711 5016 5583 5441 5637 4933 5638 5381 5310 5289 5433 ]
T [ 4640 4986 5828 5342 4707 4145 4729 5115 5010 4101 3966 4032 4816 4536 5312 2863 1593 7102 11 517 9428 13 19488 17 925 4583 6084 4953 4148 4351 5178 5006 5221 4620 3900 3997 4256 4139 3964 4783 5413 4240 4186 4245 4861 4757 5022 4831 4651 4482 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.03 -0.02 -0.04 0.12 -0.14 0.04 -0.05 -0.09 0.07 -0.06 -0.01 0.00 0.00 0.00 ]
C [ 0.02 0.03 0.02 0.03 0.01 0.04 0.19 -0.04 0.16 0.00 -0.01 -0.05 0.00 0.08 0.04 0.03 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.04 0.07 0.01 -0.06 0.00 -0.02 0.15 -0.04 0.20 0.04 -0.00 0.03 0.02 0.03 0.02 ]
T [ 0.00 0.00 -0.00 -0.01 -0.05 0.05 -0.09 -0.04 0.04 -0.13 0.14 -0.04 -0.03 0.04 0.00 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1065

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 808

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 24

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000642.1 USF1 ENCSR099FCQ HepG2 Homo sapiens MA0093.4
BP000643.1 USF1 ENCSR248QBT WTC11 Homo sapiens MA0093.4
BP000644.1 USF1 ENCSR787CHF K562 Homo sapiens MA0093.4
Showing 3 profiles of page 2 from 2 pages