Detailed information of deep learning profile BP000630.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000630.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR784BVD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.05 0.00 0.04 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1393 1442 1382 1381 1460 1413 1427 1412 1289 1399 1289 1323 1213 1346 1322 1302 1217 1292 1176 1428 1335 1623 1471 781 351 4863 0 6 115 0 815 1160 990 1242 1110 1329 1298 1310 1317 1336 1386 1398 1227 1325 1276 1358 1391 1325 1312 1427 ]
C [ 2512 2465 2466 2476 2494 2391 2465 2456 2541 2434 2438 2510 2628 2528 2606 2702 2542 2647 2690 2517 2607 2149 1420 5527 7307 7 7677 0 53 1 3055 2224 3158 2615 2845 2391 2426 2517 2452 2501 2454 2404 2635 2576 2446 2537 2471 2463 2603 2416 ]
G [ 2503 2405 2458 2492 2357 2483 2487 2428 2431 2525 2597 2531 2429 2479 2417 2433 2651 2321 2507 2518 2476 2657 3794 802 17 1956 0 7672 0 7635 2546 2142 1884 2521 2340 2599 2634 2475 2542 2547 2503 2554 2441 2375 2508 2480 2430 2406 2368 2411 ]
T [ 1270 1366 1372 1329 1367 1391 1299 1382 1417 1320 1354 1314 1408 1325 1333 1241 1268 1418 1305 1215 1260 1249 993 568 3 852 1 0 7510 42 1262 2152 1646 1300 1383 1359 1320 1376 1367 1294 1335 1322 1375 1402 1448 1303 1386 1484 1395 1424 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.04 0.01 -0.01 -0.03 -0.01 -0.01 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.01 0.04 -0.03 0.05 -0.03 0.02 -0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 -0.01 0.02 -0.03 0.05 -0.03 0.04 0.01 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.01 -0.03 -0.01 0.01 -0.04 0.03 -0.00 -0.00 0.00 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4044

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 680

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 421

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 120

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 95

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages