Detailed information of deep learning profile BP000627.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000627.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000FAG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.05 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.07 0.00 0.08 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 323 308 321 302 322 325 277 311 298 287 322 324 271 335 298 254 341 284 300 405 527 312 3 1620 0 1 171 0 104 245 270 302 228 291 301 316 286 278 318 291 302 291 279 314 320 296 307 314 334 289 ]
C [ 488 496 495 495 500 454 498 489 498 513 510 461 547 471 455 510 531 550 436 372 428 512 1617 0 1621 0 0 4 140 700 570 436 534 486 468 514 474 448 463 470 536 518 501 529 473 474 512 461 461 485 ]
G [ 528 488 494 513 492 515 519 510 512 531 484 524 499 481 519 532 481 535 576 641 425 600 3 0 0 1622 0 1566 1176 347 412 601 541 560 539 506 546 556 530 565 514 515 522 503 511 523 530 503 501 544 ]
T [ 284 331 313 313 309 329 329 313 315 292 307 314 306 336 351 327 270 254 311 205 243 199 0 3 2 0 1452 53 203 331 371 284 320 286 315 287 317 341 312 297 271 299 321 277 319 330 274 345 327 305 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.01 0.05 -0.06 0.02 -0.01 -0.04 -0.02 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.07 -0.08 0.08 -0.07 0.03 -0.04 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.04 0.04 -0.07 0.08 -0.07 0.06 0.02 -0.00 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.04 -0.01 0.03 -0.06 0.05 -0.01 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 42

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages