Detailed information of deep learning profile BP000624.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000624.1
Cell line/tissue: HeLa-S3
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000EZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.06 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.07 0.00 0.06 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 398 409 421 426 414 381 411 398 398 353 399 392 361 397 408 367 419 423 472 501 244 91 1738 1 2 17 4 187 337 322 380 368 378 394 372 372 388 440 420 386 416 411 372 397 392 388 424 412 397 365 ]
C [ 590 605 594 599 617 614 609 604 621 687 657 663 712 635 633 696 640 657 480 458 1383 1889 3 2003 0 57 2 875 611 711 666 615 597 610 638 627 611 629 586 639 608 622 641 598 604 628 599 633 615 570 ]
G [ 612 570 620 584 577 593 606 588 610 550 556 535 572 604 576 563 650 589 697 800 236 20 159 1 2008 2 2000 631 435 448 552 643 671 615 645 573 627 566 592 613 588 572 595 574 600 580 568 559 592 621 ]
T [ 410 426 375 401 402 422 384 420 381 420 398 420 365 374 393 384 301 341 361 251 147 10 110 5 0 1934 4 317 627 529 412 384 364 391 355 438 384 375 412 372 398 405 402 441 414 414 419 406 406 454 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.00 0.04 -0.04 0.03 -0.01 -0.03 -0.01 -0.01 0.00 0.00 ]
C [ 0.01 0.00 -0.01 0.01 0.05 -0.06 0.06 -0.06 0.03 -0.03 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.03 0.03 -0.06 0.07 -0.06 0.06 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.01 -0.01 -0.03 -0.00 0.02 -0.04 0.04 -0.00 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3032

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 241

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages