Detailed information of deep learning profile BP000624.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000624.1
Cell line/tissue: HeLa-S3
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000EZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.06 0.00 0.07 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.06 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 454 406 406 419 414 414 441 402 405 398 372 412 375 384 438 355 391 364 384 412 529 627 317 4 1934 0 5 110 10 147 251 361 341 301 384 393 374 365 420 398 420 381 420 384 422 402 401 375 426 410 ]
C [ 621 592 559 568 580 600 574 595 572 588 613 592 566 627 573 645 615 671 643 552 448 435 631 2000 2 2008 1 159 20 236 800 697 589 650 563 576 604 572 535 556 550 610 588 606 593 577 584 620 570 612 ]
G [ 570 615 633 599 628 604 598 641 622 608 639 586 629 611 627 638 610 597 615 666 711 611 875 2 57 0 2003 3 1889 1383 458 480 657 640 696 633 635 712 663 657 687 621 604 609 614 617 599 594 605 590 ]
T [ 365 397 412 424 388 392 397 372 411 416 386 420 440 388 372 372 394 378 368 380 322 337 187 4 17 2 1 1738 91 244 501 472 423 419 367 408 397 361 392 399 353 398 398 411 381 414 426 421 409 398 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.00 0.04 -0.04 0.02 -0.00 -0.03 -0.01 -0.01 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.06 -0.06 0.07 -0.06 0.03 -0.03 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.03 0.03 -0.06 0.06 -0.06 0.05 0.01 -0.01 0.00 0.01 ]
T [ 0.00 0.00 -0.01 -0.01 -0.03 -0.01 0.03 -0.04 0.04 -0.00 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3032

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 241

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages