Detailed information of deep learning profile BP000623.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in NB4 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000623.1
Cell line/tissue: NB4
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000EHR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.06 0.00 0.07 0.00 0.01 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.07 0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1176 1090 1073 1117 1047 1110 1077 1035 1037 1096 1051 1055 992 1058 1031 1066 1080 1314 1705 945 13 5284 0 3 597 6 420 765 975 949 907 990 1051 981 989 1068 1055 1153 1034 1077 985 1071 1078 1065 1031 1085 1062 1030 1042 1022 ]
C [ 1579 1533 1629 1596 1647 1603 1658 1656 1759 1679 1657 1699 1717 1647 1755 1607 1649 1417 1419 1683 5434 1 5436 0 1282 22 548 2447 1793 1518 1788 1669 1517 1767 1530 1611 1609 1568 1690 1640 1707 1666 1640 1649 1630 1575 1654 1642 1650 1677 ]
G [ 1656 1806 1694 1631 1684 1689 1628 1770 1574 1641 1652 1676 1680 1715 1617 1788 1696 1954 1544 2264 1 134 0 5446 0 5119 3776 959 1435 1914 1703 1842 1826 1694 1906 1747 1716 1743 1654 1691 1638 1664 1614 1658 1676 1690 1648 1711 1615 1658 ]
T [ 1038 1020 1053 1105 1071 1047 1086 988 1079 1033 1089 1019 1060 1029 1046 988 1024 764 781 557 1 30 13 0 3570 302 705 1278 1246 1068 1051 948 1055 1007 1024 1023 1069 985 1071 1041 1119 1048 1117 1077 1112 1099 1085 1066 1142 1092 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 0.00 0.05 -0.06 0.04 -0.00 -0.04 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.06 -0.07 0.07 -0.06 0.03 -0.03 0.01 0.02 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 -0.04 0.03 -0.06 0.07 -0.06 0.06 0.02 -0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 -0.02 -0.04 -0.01 0.04 -0.06 0.04 0.00 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5769

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3498

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1294

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 52

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages