Detailed information of deep learning profile BP000623.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in NB4 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000623.1
Cell line/tissue: NB4
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000EHR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.06 0.00 0.07 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.07 0.00 0.06 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1092 1142 1066 1085 1099 1112 1077 1117 1048 1119 1041 1071 985 1069 1023 1024 1007 1055 948 1051 1068 1246 1278 705 302 3570 0 13 30 1 557 781 764 1024 988 1046 1029 1060 1019 1089 1033 1079 988 1086 1047 1071 1105 1053 1020 1038 ]
C [ 1658 1615 1711 1648 1690 1676 1658 1614 1664 1638 1691 1654 1743 1716 1747 1906 1694 1826 1842 1703 1914 1435 959 3776 5119 0 5446 0 134 1 2264 1544 1954 1696 1788 1617 1715 1680 1676 1652 1641 1574 1770 1628 1689 1684 1631 1694 1806 1656 ]
G [ 1677 1650 1642 1654 1575 1630 1649 1640 1666 1707 1640 1690 1568 1609 1611 1530 1767 1517 1669 1788 1518 1793 2447 548 22 1282 0 5436 1 5434 1683 1419 1417 1649 1607 1755 1647 1717 1699 1657 1679 1759 1656 1658 1603 1647 1596 1629 1533 1579 ]
T [ 1022 1042 1030 1062 1085 1031 1065 1078 1071 985 1077 1034 1153 1055 1068 989 981 1051 990 907 949 975 765 420 6 597 3 0 5284 13 945 1705 1314 1080 1066 1031 1058 992 1055 1051 1096 1037 1035 1077 1110 1047 1117 1073 1090 1176 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 0.00 0.04 -0.06 0.04 -0.01 -0.04 -0.02 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 -0.00 0.02 0.06 -0.06 0.07 -0.06 0.03 -0.04 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.02 0.01 -0.03 0.03 -0.06 0.07 -0.07 0.06 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 -0.01 -0.04 -0.00 0.04 -0.06 0.05 0.00 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5769

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3498

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1294

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 52

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000629.1 MYC ENCSR744JJU K562 Homo sapiens MA0147.4
BP000630.1 MYC ENCSR784BVD HepG2 Homo sapiens MA0147.4
Showing 2 profiles of page 3 from 3 pages