Detailed information of deep learning profile BP000618.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000618.1
Cell line/tissue: MCF 10A
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.09 -0.00 0.10 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.10 -0.00 0.08 0.02 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 982 970 1048 1021 994 1000 941 1034 969 992 952 1015 929 1010 970 892 889 969 927 1186 1519 828 17 4278 0 3 436 2 113 686 895 862 761 883 990 920 944 920 968 1006 896 1002 969 1035 1010 967 969 987 1009 1012 ]
C [ 1254 1268 1260 1227 1194 1231 1246 1218 1280 1251 1300 1208 1406 1215 1283 1279 1424 1308 1372 1017 1038 1312 4438 3 4473 3 505 29 458 2121 1363 1190 1325 1297 1216 1346 1185 1277 1197 1208 1300 1292 1289 1278 1232 1205 1227 1223 1219 1218 ]
G [ 1271 1316 1247 1303 1302 1303 1295 1235 1321 1314 1214 1319 1198 1332 1273 1385 1272 1331 1311 1530 1166 2107 23 98 0 4472 1 4285 3298 675 1066 1478 1412 1436 1365 1310 1427 1335 1377 1340 1312 1244 1219 1226 1212 1310 1266 1270 1276 1280 ]
T [ 971 924 923 927 988 944 996 991 908 921 1012 936 945 921 952 922 893 870 868 745 755 231 0 99 5 0 3536 162 609 996 1154 948 980 862 907 902 922 946 936 924 970 940 1001 939 1024 996 1016 998 974 968 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 0.01 0.00 0.06 -0.09 0.04 -0.00 -0.05 -0.03 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.02 0.09 -0.06 0.10 -0.03 0.06 -0.04 0.02 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 -0.04 0.06 -0.03 0.10 -0.06 0.08 0.03 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.04 -0.01 0.04 -0.09 0.05 0.01 0.01 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 10637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5325

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4624

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2709

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 63

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 31

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages