Detailed information of deep learning profile BP000617.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000617.1
Cell line/tissue: MCF 10A
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.06 0.00 0.08 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.08 0.00 0.07 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 720 710 733 771 760 733 789 737 749 706 749 695 758 695 703 651 711 695 712 772 866 860 523 180 2520 0 6 48 2 196 574 602 681 656 696 733 760 715 728 697 824 727 699 715 747 767 732 731 764 746 ]
C [ 874 901 887 874 875 890 874 825 864 880 845 908 923 931 923 959 923 956 953 1004 719 493 2201 2936 8 3186 1 91 32 1379 862 979 842 857 854 959 855 808 861 913 812 875 905 852 901 872 871 892 842 863 ]
G [ 825 811 821 786 841 816 822 850 854 872 889 850 784 828 835 908 789 900 973 795 918 1413 326 78 375 7 3191 5 3159 1008 650 694 909 892 973 845 855 866 900 854 816 841 850 795 845 781 848 822 807 849 ]
T [ 782 779 760 770 725 762 716 789 734 743 718 748 736 747 740 683 778 650 563 630 698 435 151 7 298 8 3 3057 8 618 1115 926 769 796 678 664 731 812 712 737 749 758 747 839 708 781 750 756 788 743 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 0.01 -0.00 0.04 -0.06 0.04 -0.01 -0.03 -0.02 -0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.02 0.06 -0.06 0.08 -0.04 0.05 -0.03 0.02 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.02 0.02 -0.02 0.05 -0.04 0.08 -0.06 0.07 0.02 0.01 0.01 0.01 ]
T [ -0.00 0.00 -0.01 -0.02 -0.03 -0.01 0.03 -0.06 0.04 -0.00 0.01 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 13144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 107

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages