Detailed information of deep learning profile BP000617.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000617.1
Cell line/tissue: MCF 10A
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.07 0.00 0.08 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.08 0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 743 788 756 750 781 708 839 747 758 749 737 712 812 731 664 678 796 769 926 1115 618 8 3057 3 8 298 7 151 435 698 630 563 650 778 683 740 747 736 748 718 743 734 789 716 762 725 770 760 779 782 ]
C [ 849 807 822 848 781 845 795 850 841 816 854 900 866 855 845 973 892 909 694 650 1008 3159 5 3191 7 375 78 326 1413 918 795 973 900 789 908 835 828 784 850 889 872 854 850 822 816 841 786 821 811 825 ]
G [ 863 842 892 871 872 901 852 905 875 812 913 861 808 855 959 854 857 842 979 862 1379 32 91 1 3186 8 2936 2201 493 719 1004 953 956 923 959 923 931 923 908 845 880 864 825 874 890 875 874 887 901 874 ]
T [ 746 764 731 732 767 747 715 699 727 824 697 728 715 760 733 696 656 681 602 574 196 2 48 6 0 2520 180 523 860 866 772 712 695 711 651 703 695 758 695 749 706 749 737 789 733 760 771 733 710 720 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 0.01 -0.00 0.04 -0.06 0.03 -0.01 -0.03 -0.02 -0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.07 -0.06 0.08 -0.04 0.05 -0.02 0.02 0.02 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.02 -0.03 0.05 -0.04 0.08 -0.06 0.06 0.02 0.00 0.01 0.01 ]
T [ -0.00 0.00 -0.01 -0.02 -0.03 -0.01 0.04 -0.06 0.04 -0.00 0.01 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 13144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 107

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000629.1 MYC ENCSR744JJU K562 Homo sapiens MA0147.4
BP000630.1 MYC ENCSR784BVD HepG2 Homo sapiens MA0147.4
Showing 2 profiles of page 3 from 3 pages