JASPAR - GATA2 - BP000607.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000607.1
Cell line/tissue:	HepG2
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR897LDT
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6374

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	-0.00	0.00	0.08	0.00	0.00	0.00	-0.00	0.00	]
C [	0.00	0.00	0.01	0.00	-0.00	0.00	0.00	0.06	-0.00	0.00	-0.00	]
G [	-0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	]
T [	0.00	0.00	-0.00	0.03	0.03	0.00	0.07	0.00	0.01	-0.00	0.00	]

Frequency matrix

A [	1630	1639	1509	1499	1657	1593	1665	1652	1536	1623	1518	1751	1616	1652	1410	1317	569	395	151	289	6373	1	7	1726	784	1368	1625	1719	2087	1938	1577	1777	1526	2071	1548	1559	1731	1623	1708	1634	1686	1760	1671	1705	1694	1740	1664	1703	1751	1687	]
C [	1582	1444	1526	1558	1552	1488	1390	1483	1457	1583	1550	1588	1669	1698	1485	1734	2018	3618	450	26	0	0	6366	24	1790	1469	1345	1601	1350	1304	1824	1827	1687	1484	1256	1922	1313	1546	1508	1527	1594	1489	1590	1568	1508	1511	1449	1505	1480	1485	]
G [	1401	1446	1531	1411	1382	1351	1338	1337	1457	1305	1349	1338	1428	1244	1503	1313	1365	1323	57	71	0	0	0	124	2469	846	1357	1352	1168	1098	1034	921	1151	1183	1200	1251	1264	1507	1332	1420	1428	1338	1343	1320	1374	1370	1441	1468	1433	1400	]
T [	1761	1845	1808	1906	1783	1942	1981	1902	1924	1863	1957	1697	1661	1780	1976	2010	2422	1038	5716	5988	1	6373	1	4500	1331	2691	2047	1702	1769	2034	1939	1849	2010	1636	2370	1642	2066	1698	1826	1793	1666	1787	1770	1781	1798	1753	1820	1698	1710	1802	]

Hypothetical CWM

A [	0.00	0.00	-0.01	-0.01	-0.00	0.01	0.08	-0.02	-0.02	0.01	0.00	0.00	0.00	0.00	]
C [	0.00	0.01	0.01	0.02	0.01	-0.03	-0.04	-0.03	0.06	-0.03	0.01	0.00	0.01	0.01	]
G [	0.01	0.00	0.01	0.02	-0.01	-0.02	-0.01	-0.04	-0.02	0.01	0.01	0.00	0.01	0.01	]
T [	0.00	0.00	0.01	0.00	0.03	0.03	-0.05	0.07	-0.01	0.02	0.00	0.01	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5185

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1993

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1919

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1911

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1222

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1087

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 1087

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 900

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 613

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 124

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 78

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 43

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 38

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4