Detailed information of deep learning profile BP000606.1

  1. Home
  2. Deep Learning Profile > BP000606.1
This page shows detailed deep learning-derived predictions and motifs for GATA2 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000606.1
Cell line/tissue: SK-N-SH
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
JASPAR ID: MA0036.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR706VOO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 0.00 0.07 0.00 0.03 0.02 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 4516 4580 4574 4560 4472 4489 4471 4573 4522 4541 4533 4439 4397 4707 4704 5083 4977 4611 4155 5241 3805 4785 4828 5048 5263 3122 10861 34 16270 0 14646 13572 3341 6075 5320 5232 4499 5141 4623 4928 4824 4851 4452 4427 4560 4400 4651 4506 4559 4457 ]
C [ 3623 3623 3652 3715 3653 3494 3670 3629 3659 3592 3524 3565 3695 3577 3108 3037 3013 2759 3110 3005 3344 3464 3048 3284 2363 6623 338 0 0 0 233 309 3421 3348 3462 3897 3844 3536 3531 3369 3393 3351 3332 3515 3526 3628 3562 3579 3556 3660 ]
G [ 3753 3682 3691 3754 3802 3984 3870 3770 3784 3836 3961 3854 3975 3639 4297 4308 3457 3666 4853 3731 3903 3991 4086 3542 4147 4576 58 16214 0 0 112 1575 7642 4863 4237 3477 4106 3595 3692 3948 3858 3675 3967 3877 3891 4071 3794 3906 3837 3968 ]
T [ 4378 4385 4353 4241 4343 4303 4259 4298 4305 4301 4252 4412 4203 4347 4161 3842 4823 5234 4152 4293 5218 4030 4308 4396 4497 1949 5013 22 0 16270 1279 814 1866 1984 3251 3664 3821 3998 4424 4025 4195 4393 4519 4451 4293 4171 4263 4279 4318 4185 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 0.02 0.00 0.07 -0.04 0.03 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 0.02 -0.02 -0.01 -0.00 0.01 -0.01 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.06 -0.04 -0.02 -0.01 0.01 0.02 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 0.08 0.01 0.00 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1456

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1335

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 665

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 318

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 246

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 26

CWM

PFM

     

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000600.1 GATA2 ENCSR000BKM K562 Homo sapiens MA0036.4
BP000601.1 GATA2 ENCSR000DKA K562 Homo sapiens MA0036.4
BP000602.1 GATA2 ENCSR000EVW endothelial cell of umbilical vein Homo sapiens MA0036.4
BP000603.1 GATA2 ENCSR000EWG K562 Homo sapiens MA0036.4
BP000604.1 GATA2 ENCSR000EYB SH-SY5Y Homo sapiens MA0036.4
BP000605.1 GATA2 ENCSR257RKC K562 Homo sapiens MA0036.4
BP000607.1 GATA2 ENCSR897LDT HepG2 Homo sapiens MA0036.4
Showing 7 profiles of page 1 from 1 pages
  • 1 (current)