JASPAR - GATA2 - BP000601.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000601.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000DKA
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 24320

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.06	-0.00	0.00	0.00	-0.00	0.00	-0.00	]
C [	0.00	0.01	0.00	0.00	0.00	0.00	0.06	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	]
T [	0.00	-0.00	0.02	0.03	0.00	0.05	0.00	0.01	-0.00	-0.00	0.00	]

Frequency matrix

A [	6218	6321	6153	6317	6293	6092	6551	6275	6356	6438	6304	6372	6484	6849	6538	6177	5760	2898	3036	1757	2582	24295	31	7	7177	3537	5626	6676	6314	6690	6393	6442	5936	7188	8701	5696	6173	5855	5738	5899	6213	6190	6527	6195	6207	6091	6390	6145	6484	6281	]
C [	5849	5841	5752	5827	5701	6035	5760	5692	5900	5887	6009	6422	5949	5506	5431	5236	5793	7139	10869	3415	225	7	4	24307	295	7013	6636	5958	6175	5852	5968	6863	8453	8744	5120	6130	6204	5798	5805	6088	5990	6091	5844	6011	5820	5988	5748	5943	5663	5670	]
G [	5210	5439	5464	5417	5206	5413	5175	5372	5372	5273	5306	5037	4970	5371	5743	6292	4369	4566	5453	991	306	12	9	3	692	8058	3936	4931	5087	5157	5082	4718	4510	3587	4730	6292	5208	5245	6082	5584	5297	5504	5153	5414	5234	5398	5176	5315	5271	5395	]
T [	7043	6719	6951	6759	7120	6780	6834	6981	6692	6722	6701	6489	6917	6594	6608	6615	8398	9717	4962	18157	21207	6	24276	3	16156	5712	8122	6755	6744	6621	6877	6297	5421	4801	5769	6202	6735	7422	6695	6749	6820	6535	6796	6700	7059	6843	7006	6917	6902	6974	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.01	-0.01	-0.01	0.00	0.06	-0.02	-0.02	0.01	-0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.01	0.02	0.00	-0.02	-0.03	-0.04	0.06	-0.03	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.00	0.01	0.02	-0.01	-0.01	-0.01	-0.03	-0.02	0.01	0.01	0.01	0.00	0.01	]
T [	-0.00	-0.00	0.00	0.00	-0.01	0.02	0.03	-0.04	0.05	-0.02	0.02	0.00	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 847

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 558

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 199

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 152

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 100

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 92

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 60

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 41

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 35

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 32

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 31

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 23

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4