JASPAR - GATA2 - BP000607.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000607.1
Cell line/tissue:	HepG2
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR897LDT
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6374

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.01	0.00	0.07	0.00	0.03	0.03	-0.00	0.00	0.00	]
C [	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	-0.00	]
G [	-0.00	0.00	-0.00	0.06	0.00	0.00	-0.00	0.00	0.01	0.00	0.00	]
T [	0.00	-0.00	0.00	0.00	0.00	0.08	0.00	-0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	1802	1710	1698	1820	1753	1798	1781	1770	1787	1666	1793	1826	1698	2066	1642	2370	1636	2010	1849	1939	2034	1769	1702	2047	2691	1331	4500	1	6373	1	5988	5716	1038	2422	2010	1976	1780	1661	1697	1957	1863	1924	1902	1981	1942	1783	1906	1808	1845	1761	]
C [	1400	1433	1468	1441	1370	1374	1320	1343	1338	1428	1420	1332	1507	1264	1251	1200	1183	1151	921	1034	1098	1168	1352	1357	846	2469	124	0	0	0	71	57	1323	1365	1313	1503	1244	1428	1338	1349	1305	1457	1337	1338	1351	1382	1411	1531	1446	1401	]
G [	1485	1480	1505	1449	1511	1508	1568	1590	1489	1594	1527	1508	1546	1313	1922	1256	1484	1687	1827	1824	1304	1350	1601	1345	1469	1790	24	6366	0	0	26	450	3618	2018	1734	1485	1698	1669	1588	1550	1583	1457	1483	1390	1488	1552	1558	1526	1444	1582	]
T [	1687	1751	1703	1664	1740	1694	1705	1671	1760	1686	1634	1708	1623	1731	1559	1548	2071	1526	1777	1577	1938	2087	1719	1625	1368	784	1726	7	1	6373	289	151	395	569	1317	1410	1652	1616	1751	1518	1623	1536	1652	1665	1593	1657	1499	1509	1639	1630	]

Hypothetical CWM

A [	0.00	0.01	0.01	0.00	0.02	-0.01	0.07	-0.05	0.03	0.03	0.00	0.01	0.00	0.00	]
C [	0.01	0.01	0.00	0.01	0.01	-0.02	-0.04	-0.01	-0.02	-0.01	0.02	0.01	0.00	0.01	]
G [	0.01	0.01	0.00	0.01	-0.03	0.06	-0.03	-0.04	-0.03	0.01	0.02	0.01	0.01	0.00	]
T [	0.00	0.00	0.00	0.00	0.01	-0.02	-0.02	0.08	0.01	-0.00	-0.01	-0.01	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5185

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1993

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1919

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1911

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1222

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1087

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 1087

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 900

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 613

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 124

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 78

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 43

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 38

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4