JASPAR - GATA2 - BP000605.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000605.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR257RKC
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 17054

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.00	0.06	-0.00	0.00	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.01	0.00	0.00	0.00	0.00	0.05	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	]
T [	0.00	-0.00	0.01	0.03	-0.00	0.06	0.00	0.01	-0.00	0.00	0.00	]

Frequency matrix

A [	4131	4201	4161	4208	4148	4155	4200	4244	4167	4180	4188	4318	4491	4154	4239	3681	1781	1844	1123	2074	17036	10	4	4205	2287	3513	4523	4139	4702	4446	4244	4023	5029	6381	3756	4192	3744	3537	3789	4025	3949	4222	4150	4186	3930	4186	4127	4314	4232	4244	]
C [	4454	4310	4407	4390	4538	4327	4274	4486	4561	4481	4759	4479	4044	4202	3949	4178	5562	8322	2607	167	1	0	17044	269	5513	4942	4478	4759	4458	4261	5237	6738	7092	3732	4574	4504	4467	4249	4545	4435	4601	4565	4479	4191	4378	4227	4291	4293	4209	4330	]
G [	4065	3912	4064	3789	3896	3867	4082	3935	3841	3855	3733	3770	3861	3986	4254	3307	3326	3832	770	300	15	5	1	629	5435	2956	3910	3756	3639	3599	3313	3066	2254	3277	4977	3914	4134	4773	4256	4015	4155	3852	3888	4067	4137	4033	4077	3977	4054	3999	]
T [	4404	4631	4422	4667	4472	4705	4498	4389	4485	4538	4374	4487	4658	4712	4612	5888	6385	3056	12554	14513	2	17039	5	11951	3819	5643	4143	4400	4255	4748	4260	3227	2679	3664	3747	4444	4709	4495	4464	4579	4349	4415	4537	4610	4609	4608	4559	4470	4559	4481	]

Hypothetical CWM

A [	-0.01	-0.01	-0.00	0.00	0.06	-0.02	-0.02	0.01	-0.00	0.00	0.00	0.00	]
C [	0.01	0.01	-0.00	-0.03	-0.03	-0.04	0.05	-0.02	0.01	0.01	0.01	0.01	]
G [	0.00	0.01	-0.01	-0.01	-0.02	-0.03	-0.02	0.01	0.01	0.00	0.00	0.00	]
T [	0.00	-0.00	0.02	0.03	-0.03	0.06	-0.02	0.01	0.00	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 467

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 129

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 95

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 49

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 48

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 28

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4