JASPAR - GATA2 - BP000605.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000605.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR257RKC
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 17054

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	0.01	0.00	0.06	-0.00	0.03	0.01	-0.00	0.00	]
C [	-0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.05	0.00	0.00	0.00	0.00	0.01	0.00	]
T [	-0.00	-0.00	-0.00	0.00	0.00	-0.00	0.06	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	4481	4559	4470	4559	4608	4609	4610	4537	4415	4349	4579	4464	4495	4709	4444	3747	3664	2679	3227	4260	4748	4255	4400	4143	5643	3819	11951	5	17039	2	14513	12554	3056	6385	5888	4612	4712	4658	4487	4374	4538	4485	4389	4498	4705	4472	4667	4422	4631	4404	]
C [	3999	4054	3977	4077	4033	4137	4067	3888	3852	4155	4015	4256	4773	4134	3914	4977	3277	2254	3066	3313	3599	3639	3756	3910	2956	5435	629	1	5	15	300	770	3832	3326	3307	4254	3986	3861	3770	3733	3855	3841	3935	4082	3867	3896	3789	4064	3912	4065	]
G [	4330	4209	4293	4291	4227	4378	4191	4479	4565	4601	4435	4545	4249	4467	4504	4574	3732	7092	6738	5237	4261	4458	4759	4478	4942	5513	269	17044	0	1	167	2607	8322	5562	4178	3949	4202	4044	4479	4759	4481	4561	4486	4274	4327	4538	4390	4407	4310	4454	]
T [	4244	4232	4314	4127	4186	3930	4186	4150	4222	3949	4025	3789	3537	3744	4192	3756	6381	5029	4023	4244	4446	4702	4139	4523	3513	2287	4205	4	10	17036	2074	1123	1844	1781	3681	4239	4154	4491	4318	4188	4180	4167	4244	4200	4155	4148	4208	4161	4201	4131	]

Hypothetical CWM

A [	-0.00	0.00	0.00	0.00	0.01	-0.02	0.06	-0.03	0.03	0.02	-0.00	0.00	]
C [	0.00	0.00	0.00	0.01	0.01	-0.02	-0.03	-0.02	-0.01	-0.01	0.01	0.00	]
G [	0.01	0.01	0.01	0.01	-0.02	0.05	-0.04	-0.03	-0.03	-0.00	0.01	0.01	]
T [	0.00	0.00	0.00	-0.00	0.01	-0.02	-0.02	0.06	0.00	-0.00	-0.01	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 467

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 129

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 95

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 49

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 48

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 28

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4