Detailed information of deep learning profile BP000604.1

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This page shows detailed deep learning-derived predictions and motifs for GATA2 in SH-SY5Y using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000604.1
Cell line/tissue: SH-SY5Y
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
JASPAR ID: MA0036.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR000EYB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 0.00 0.11 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.10 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.03 0.04 0.00 0.10 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1391 1475 1430 1498 1400 1406 1418 1492 1500 1452 1422 1375 1312 1544 1492 1390 1180 937 309 262 34 113 5713 0 0 1451 568 1050 1640 1299 1207 1208 1204 1272 1474 1500 1515 1440 1385 1544 1504 1438 1524 1540 1440 1409 1396 1524 1452 1448 ]
C [ 1432 1377 1444 1380 1377 1392 1501 1444 1414 1444 1478 1384 1414 1299 1357 1427 1188 1590 2063 3753 140 6 0 0 5712 5 1867 1703 1416 1513 1727 1622 1753 1686 1596 1393 1346 1349 1491 1383 1389 1461 1346 1345 1374 1406 1473 1404 1416 1395 ]
G [ 1292 1326 1328 1291 1377 1377 1352 1288 1323 1290 1309 1356 1411 1344 1306 1320 1502 1290 1230 984 5 3 0 0 0 99 2075 919 1327 1183 1374 1443 1411 1407 1298 1402 1416 1299 1363 1339 1329 1284 1318 1293 1358 1336 1273 1263 1369 1320 ]
T [ 1598 1535 1511 1544 1559 1538 1442 1489 1476 1527 1504 1598 1576 1526 1558 1576 1843 1896 2111 714 5534 5591 0 5713 1 4158 1203 2041 1330 1718 1405 1440 1345 1348 1345 1418 1436 1625 1474 1447 1491 1530 1525 1535 1541 1562 1571 1522 1476 1550 ]

Hypothetical CWM

   
A [ 0.00 -0.02 -0.00 -0.01 0.01 0.11 -0.05 -0.03 0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.04 -0.07 -0.05 0.10 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.02 -0.01 -0.01 -0.01 -0.05 -0.04 0.02 0.03 0.01 0.01 0.01 ]
T [ -0.00 0.01 -0.00 0.03 0.04 -0.08 0.10 -0.02 0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4800

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3449

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3008

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 2855

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 2371

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 2054

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 1478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 1307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 1300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 937

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 485

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 434

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 24

CWM

PFM

     

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000600.1 GATA2 ENCSR000BKM K562 Homo sapiens MA0036.4
BP000601.1 GATA2 ENCSR000DKA K562 Homo sapiens MA0036.4
BP000602.1 GATA2 ENCSR000EVW endothelial cell of umbilical vein Homo sapiens MA0036.4
BP000603.1 GATA2 ENCSR000EWG K562 Homo sapiens MA0036.4
BP000605.1 GATA2 ENCSR257RKC K562 Homo sapiens MA0036.4
BP000606.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens MA0036.4
BP000607.1 GATA2 ENCSR897LDT HepG2 Homo sapiens MA0036.4
Showing 7 profiles of page 1 from 1 pages
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