Detailed information of deep learning profile BP000604.1

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This page shows detailed deep learning-derived predictions and motifs for GATA2 in SH-SY5Y using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000604.1
Cell line/tissue: SH-SY5Y
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
JASPAR ID: MA0036.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR000EYB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 0.00 0.10 0.00 0.04 0.03 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.10 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.00 0.11 0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1550 1476 1522 1571 1562 1541 1535 1525 1530 1491 1447 1474 1625 1436 1418 1345 1348 1345 1440 1405 1718 1330 2041 1203 4158 1 5713 0 5591 5534 714 2111 1896 1843 1576 1558 1526 1576 1598 1504 1527 1476 1489 1442 1538 1559 1544 1511 1535 1598 ]
C [ 1320 1369 1263 1273 1336 1358 1293 1318 1284 1329 1339 1363 1299 1416 1402 1298 1407 1411 1443 1374 1183 1327 919 2075 99 0 0 0 3 5 984 1230 1290 1502 1320 1306 1344 1411 1356 1309 1290 1323 1288 1352 1377 1377 1291 1328 1326 1292 ]
G [ 1395 1416 1404 1473 1406 1374 1345 1346 1461 1389 1383 1491 1349 1346 1393 1596 1686 1753 1622 1727 1513 1416 1703 1867 5 5712 0 0 6 140 3753 2063 1590 1188 1427 1357 1299 1414 1384 1478 1444 1414 1444 1501 1392 1377 1380 1444 1377 1432 ]
T [ 1448 1452 1524 1396 1409 1440 1540 1524 1438 1504 1544 1385 1440 1515 1500 1474 1272 1204 1208 1207 1299 1640 1050 568 1451 0 0 5713 113 34 262 309 937 1180 1390 1492 1544 1312 1375 1422 1452 1500 1492 1418 1406 1400 1498 1430 1475 1391 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.02 -0.02 0.10 -0.08 0.04 0.03 -0.00 0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.03 0.02 -0.04 -0.05 -0.01 -0.01 -0.01 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.10 -0.05 -0.07 -0.04 0.01 0.02 0.02 0.01 ]
T [ -0.00 -0.00 0.00 -0.00 0.01 -0.03 -0.05 0.11 0.01 -0.01 -0.00 -0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4800

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3449

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3008

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 2855

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 2371

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 2054

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 1478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 1307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 1300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 937

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 485

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 434

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 24

CWM

PFM

     

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000600.1 GATA2 ENCSR000BKM K562 Homo sapiens MA0036.4
BP000601.1 GATA2 ENCSR000DKA K562 Homo sapiens MA0036.4
BP000602.1 GATA2 ENCSR000EVW endothelial cell of umbilical vein Homo sapiens MA0036.4
BP000603.1 GATA2 ENCSR000EWG K562 Homo sapiens MA0036.4
BP000605.1 GATA2 ENCSR257RKC K562 Homo sapiens MA0036.4
BP000606.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens MA0036.4
BP000607.1 GATA2 ENCSR897LDT HepG2 Homo sapiens MA0036.4
Showing 7 profiles of page 1 from 1 pages
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