JASPAR - GATA2 - BP000603.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000603.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000EWG
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 15116

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.01	0.00	0.09	0.00	0.04	0.02	-0.00	0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.10	0.00	0.00	0.00	0.00	0.01	0.01	0.00	]
T [	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.10	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	3905	3918	3901	3912	4014	3979	3985	3878	3895	3745	3967	3792	3824	4266	3882	3124	3143	2276	2578	3571	4029	3593	3789	3470	4641	3103	9884	0	15112	0	13520	11444	2564	5229	5015	4044	4038	3872	3833	3729	3848	3821	3857	3808	3915	3816	3968	3886	3992	3818	]
C [	3694	3598	3671	3706	3594	3716	3720	3551	3491	3844	3719	3950	4316	3624	3628	4639	2989	2029	2995	3063	3476	3463	3478	3722	2773	5163	592	1	1	5	138	493	3489	3104	3216	3853	3681	3628	3555	3529	3614	3626	3618	3795	3609	3628	3505	3678	3584	3637	]
G [	3895	3959	3919	3885	3871	4058	3797	4137	4058	4184	4047	4100	3901	4068	4051	4119	3310	6315	6060	4722	3957	4223	4392	4022	4634	4910	263	15114	0	2	68	2264	7650	5185	3895	3652	3849	3748	4052	4313	4058	4016	4103	3943	4007	4209	4052	3935	3949	4014	]
T [	3622	3641	3625	3613	3637	3363	3614	3550	3672	3343	3383	3274	3075	3158	3555	3234	5674	4496	3483	3760	3654	3837	3457	3902	3068	1940	4377	1	3	15109	1390	915	1413	1598	2990	3567	3548	3868	3676	3545	3596	3653	3538	3570	3585	3463	3591	3617	3591	3647	]

Hypothetical CWM

A [	-0.00	0.00	0.00	-0.00	0.02	-0.05	0.09	-0.06	0.05	0.03	-0.01	0.00	-0.00	-0.00	-0.00	]
C [	0.02	0.01	0.01	0.02	0.03	-0.03	-0.04	-0.02	-0.02	-0.00	0.03	0.01	0.01	0.01	0.01	]
G [	0.02	0.02	0.02	0.02	-0.04	0.10	-0.05	-0.06	-0.05	0.01	0.02	0.02	0.01	0.01	0.01	]
T [	0.00	0.00	0.00	-0.00	0.01	-0.03	-0.04	0.10	0.01	-0.01	-0.01	-0.01	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 272

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 59

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 38

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 28

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 25

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4