JASPAR - GATA2 - BP000603.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000603.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000EWG
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 15116

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	0.10	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.01	0.01	0.00	0.00	0.00	0.00	0.10	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	0.00	-0.00	0.02	0.04	0.00	0.09	0.00	0.01	-0.00	-0.00	-0.00	]

Frequency matrix

A [	3647	3591	3617	3591	3463	3585	3570	3538	3653	3596	3545	3676	3868	3548	3567	2990	1598	1413	915	1390	15109	3	1	4377	1940	3068	3902	3457	3837	3654	3760	3483	4496	5674	3234	3555	3158	3075	3274	3383	3343	3672	3550	3614	3363	3637	3613	3625	3641	3622	]
C [	4014	3949	3935	4052	4209	4007	3943	4103	4016	4058	4313	4052	3748	3849	3652	3895	5185	7650	2264	68	2	0	15114	263	4910	4634	4022	4392	4223	3957	4722	6060	6315	3310	4119	4051	4068	3901	4100	4047	4184	4058	4137	3797	4058	3871	3885	3919	3959	3895	]
G [	3637	3584	3678	3505	3628	3609	3795	3618	3626	3614	3529	3555	3628	3681	3853	3216	3104	3489	493	138	5	1	1	592	5163	2773	3722	3478	3463	3476	3063	2995	2029	2989	4639	3628	3624	4316	3950	3719	3844	3491	3551	3720	3716	3594	3706	3671	3598	3694	]
T [	3818	3992	3886	3968	3816	3915	3808	3857	3821	3848	3729	3833	3872	4038	4044	5015	5229	2564	11444	13520	0	15112	0	9884	3103	4641	3470	3789	3593	4029	3571	2578	2276	3143	3124	3882	4266	3824	3792	3967	3745	3895	3878	3985	3979	4014	3912	3901	3918	3905	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.01	-0.01	-0.01	0.01	0.10	-0.04	-0.03	0.01	-0.00	0.00	0.00	0.00	]
C [	0.01	0.01	0.01	0.02	0.02	0.01	-0.05	-0.06	-0.05	0.10	-0.04	0.02	0.02	0.02	0.02	]
G [	0.01	0.01	0.01	0.01	0.03	-0.00	-0.02	-0.02	-0.04	-0.03	0.03	0.02	0.01	0.01	0.02	]
T [	-0.00	-0.00	-0.00	0.00	-0.01	0.03	0.05	-0.06	0.09	-0.05	0.02	-0.00	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 272

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 59

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 38

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 28

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 25

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4