JASPAR - GATA2 - BP000602.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000602.1
Cell line/tissue:	endothelial cell of umbilical vein
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000EVW
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 9499

Contribution weight matrix (CWM)

A [	0.00	0.01	-0.00	-0.00	0.00	-0.00	0.09	0.00	0.00	0.01	-0.00	0.00	0.00	]
C [	-0.00	-0.00	0.00	0.01	-0.00	-0.00	0.00	0.00	0.09	-0.00	0.00	-0.00	0.00	]
G [	0.01	-0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.01	-0.00	-0.00	]
T [	0.00	0.00	0.01	-0.00	0.04	0.05	0.00	0.09	0.00	0.02	0.00	0.00	0.00	]

Frequency matrix

A [	2433	2534	2509	2550	2458	2601	2483	2556	2637	2573	2467	2325	2754	2581	3010	1879	3451	565	518	250	401	9498	0	0	3222	1270	2796	2537	2363	2695	2841	2550	2661	3330	2910	2190	2409	2416	2492	2485	2504	2637	2578	2529	2653	2548	2526	2487	2478	2540	]
C [	2241	2264	2228	2122	2188	2102	2213	2195	2191	2195	2334	2515	2148	2190	2025	1689	1728	2545	5284	576	20	1	0	9499	32	2579	2098	1964	2417	2190	2208	2646	2869	2321	1756	2653	2417	2167	2244	2232	2308	2180	2268	2257	2272	2262	2195	2241	2227	2199	]
G [	1971	1959	1980	2104	1963	2085	2006	1844	1940	2002	1898	1927	1833	2182	1534	3286	1562	1592	2145	179	13	0	0	0	222	3623	1486	1911	1826	1970	1830	1601	1545	1438	1592	1761	1796	1958	2132	2047	1883	1977	1997	1997	1915	1955	1899	1935	1962	1950	]
T [	2854	2742	2782	2723	2890	2711	2797	2904	2731	2729	2800	2732	2764	2546	2930	2645	2758	4797	1552	8494	9065	0	9499	0	6023	2027	3119	3087	2893	2644	2620	2702	2424	2410	3241	2895	2877	2958	2631	2735	2804	2705	2656	2716	2659	2734	2879	2836	2832	2810	]

Hypothetical CWM

A [	0.01	0.02	-0.01	-0.00	0.00	0.01	0.09	-0.03	-0.02	0.02	0.00	0.02	0.01	0.00	]
C [	-0.00	-0.00	0.01	0.03	-0.00	-0.03	-0.05	-0.03	0.09	-0.04	0.01	0.00	0.01	0.01	]
G [	0.02	0.00	0.00	0.03	-0.01	-0.02	-0.02	-0.05	-0.02	0.01	0.02	0.01	0.01	0.01	]
T [	0.00	0.01	0.02	-0.00	0.04	0.05	-0.03	0.09	-0.02	0.03	0.01	0.01	0.01	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6281

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 6139

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1918

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1361

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 796

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 263

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 212

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 117

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 104

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 88

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 51

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 49

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4