JASPAR - GATA2 - BP000602.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000602.1
Cell line/tissue:	endothelial cell of umbilical vein
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000EVW
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 9499

Contribution weight matrix (CWM)

A [	0.00	0.00	0.00	0.02	0.00	0.09	0.00	0.05	0.04	-0.00	0.01	0.00	0.00	]
C [	-0.00	-0.00	0.01	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	-0.00	0.01	]
G [	0.00	-0.00	0.00	-0.00	0.09	0.00	0.00	-0.00	-0.00	0.01	0.00	-0.00	-0.00	]
T [	0.00	0.00	-0.00	0.01	0.00	0.00	0.09	-0.00	0.00	-0.00	-0.00	0.01	0.00	]

Frequency matrix

A [	2810	2832	2836	2879	2734	2659	2716	2656	2705	2804	2735	2631	2958	2877	2895	3241	2410	2424	2702	2620	2644	2893	3087	3119	2027	6023	0	9499	0	9065	8494	1552	4797	2758	2645	2930	2546	2764	2732	2800	2729	2731	2904	2797	2711	2890	2723	2782	2742	2854	]
C [	1950	1962	1935	1899	1955	1915	1997	1997	1977	1883	2047	2132	1958	1796	1761	1592	1438	1545	1601	1830	1970	1826	1911	1486	3623	222	0	0	0	13	179	2145	1592	1562	3286	1534	2182	1833	1927	1898	2002	1940	1844	2006	2085	1963	2104	1980	1959	1971	]
G [	2199	2227	2241	2195	2262	2272	2257	2268	2180	2308	2232	2244	2167	2417	2653	1756	2321	2869	2646	2208	2190	2417	1964	2098	2579	32	9499	0	1	20	576	5284	2545	1728	1689	2025	2190	2148	2515	2334	2195	2191	2195	2213	2102	2188	2122	2228	2264	2241	]
T [	2540	2478	2487	2526	2548	2653	2529	2578	2637	2504	2485	2492	2416	2409	2190	2910	3330	2661	2550	2841	2695	2363	2537	2796	1270	3222	0	0	9498	401	250	518	565	3451	1879	3010	2581	2754	2325	2467	2573	2637	2556	2483	2601	2458	2550	2509	2534	2433	]

Hypothetical CWM

A [	0.01	0.01	0.01	0.01	0.03	-0.02	0.09	-0.03	0.05	0.04	-0.00	0.02	0.01	0.00	]
C [	0.01	0.01	0.01	0.02	0.01	-0.02	-0.05	-0.02	-0.02	-0.01	0.03	0.00	0.00	0.02	]
G [	0.01	0.01	0.00	0.01	-0.04	0.09	-0.03	-0.05	-0.03	-0.00	0.03	0.01	-0.00	-0.00	]
T [	0.00	0.01	0.02	0.00	0.02	-0.02	-0.03	0.09	0.01	0.00	-0.00	-0.01	0.02	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6281

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 6139

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1918

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1361

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 796

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 263

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 212

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 117

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 104

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 88

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 51

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 49

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4