JASPAR - GATA2 - BP000600.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000600.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000BKM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 23318

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.01	0.00	0.07	0.00	0.03	0.02	-0.00	0.00	-0.00	]
C [	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.08	0.00	0.00	-0.00	0.00	0.01	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.07	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	6309	6510	6388	6332	6621	6424	6637	6392	6401	6254	6628	6382	6340	6945	5970	4637	4004	3054	3790	5376	6076	5959	6276	5810	7697	5337	15410	37	23188	49	19760	17263	4691	8407	7674	6764	6665	6446	6218	6146	6111	6091	6253	6286	6506	6268	6466	6365	6541	6335	]
C [	5379	5253	5362	5518	5177	5436	5295	5260	5206	5402	5222	5728	6556	5425	5462	7321	4698	2919	4311	4568	5069	5163	5081	5252	4026	7481	662	15	36	73	177	894	5077	4663	4692	5396	5186	5083	5057	5080	5235	5226	5261	5407	5141	5248	5153	5373	5257	5338	]
G [	5730	5589	5498	5658	5632	5763	5517	5765	5635	5959	5967	6010	5463	5795	6002	5526	5258	10361	9458	6861	6094	6180	5981	5792	6544	7133	579	23234	21	15	290	3445	10522	7165	5983	5427	5566	5323	5843	5955	5797	6016	5723	5689	5546	5983	5685	5709	5479	5686	]
T [	5900	5966	6070	5810	5888	5695	5869	5901	6076	5703	5501	5198	4959	5153	5884	5834	9358	6984	5759	6513	6079	6016	5980	6464	5051	3367	6667	32	73	23181	3091	1716	3028	3083	4969	5731	5901	6466	6200	6137	6175	5985	6081	5936	6125	5819	6014	5871	6041	5959	]

Hypothetical CWM

A [	-0.00	0.00	0.00	-0.00	0.02	-0.03	0.07	-0.06	0.04	0.02	-0.01	0.00	-0.00	]
C [	0.01	0.01	0.01	0.01	0.01	-0.03	-0.04	-0.01	-0.03	-0.01	0.02	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.03	0.08	-0.05	-0.04	-0.04	0.00	0.02	0.01	0.01	]
T [	0.00	0.00	0.00	-0.00	0.01	-0.03	-0.02	0.07	0.01	-0.01	-0.01	-0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2169

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 374

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 123

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 118

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 29

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4