JASPAR - GATA2 - BP000600.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000600.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000BKM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 23318

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	0.07	0.00	0.00	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.01	0.00	-0.00	0.00	0.00	0.08	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	]
T [	-0.00	0.00	-0.00	0.02	0.03	0.00	0.07	0.00	0.01	-0.00	-0.00	-0.00	]

Frequency matrix

A [	5959	6041	5871	6014	5819	6125	5936	6081	5985	6175	6137	6200	6466	5901	5731	4969	3083	3028	1716	3091	23181	73	32	6667	3367	5051	6464	5980	6016	6079	6513	5759	6984	9358	5834	5884	5153	4959	5198	5501	5703	6076	5901	5869	5695	5888	5810	6070	5966	5900	]
C [	5686	5479	5709	5685	5983	5546	5689	5723	6016	5797	5955	5843	5323	5566	5427	5983	7165	10522	3445	290	15	21	23234	579	7133	6544	5792	5981	6180	6094	6861	9458	10361	5258	5526	6002	5795	5463	6010	5967	5959	5635	5765	5517	5763	5632	5658	5498	5589	5730	]
G [	5338	5257	5373	5153	5248	5141	5407	5261	5226	5235	5080	5057	5083	5186	5396	4692	4663	5077	894	177	73	36	15	662	7481	4026	5252	5081	5163	5069	4568	4311	2919	4698	7321	5462	5425	6556	5728	5222	5402	5206	5260	5295	5436	5177	5518	5362	5253	5379	]
T [	6335	6541	6365	6466	6268	6506	6286	6253	6091	6111	6146	6218	6446	6665	6764	7674	8407	4691	17263	19760	49	23188	37	15410	5337	7697	5810	6276	5959	6076	5376	3790	3054	4004	4637	5970	6945	6340	6382	6628	6254	6401	6392	6637	6424	6621	6332	6388	6510	6309	]

Hypothetical CWM

A [	-0.00	-0.01	-0.01	-0.01	0.01	0.07	-0.02	-0.03	0.01	-0.00	0.00	0.00	0.00	]
C [	0.01	0.01	0.02	0.00	-0.04	-0.04	-0.05	0.08	-0.03	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.02	-0.01	-0.03	-0.01	-0.04	-0.03	0.01	0.01	0.01	0.01	0.01	]
T [	-0.00	0.00	-0.01	0.02	0.04	-0.06	0.07	-0.03	0.02	-0.00	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2169

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 374

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 123

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 118

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 29

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000601.1	GATA2	ENCSR000DKA	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4