Detailed information of deep learning profile BP000598.1

  1. Home
  2. Deep Learning Profile > BP000598.1
This page shows detailed deep learning-derived predictions and motifs for REST in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000598.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR893QWP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.10 -0.00 -0.00 0.17 0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.12 -0.00 0.11 -0.00 -0.01 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.13 0.00 0.00 0.03 0.00 0.20 0.11 -0.00 0.01 0.00 0.00 -0.00 0.09 0.00 -0.00 0.06 -0.00 0.02 0.03 0.01 ]
G [ 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 0.17 0.01 0.00 0.00 -0.00 0.00 -0.00 0.19 0.20 0.00 0.00 0.00 0.15 0.00 0.03 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.01 0.03 0.08 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.04 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 478 509 458 498 457 478 511 440 495 460 478 490 507 437 285 96 107 1654 55 195 1805 14 86 971 309 41 11 1666 67 1775 81 250 490 312 257 514 520 456 403 477 416 477 333 365 433 423 457 446 389 376 ]
C [ 462 447 491 504 477 492 469 469 440 460 464 446 383 441 218 300 1556 37 49 989 28 1847 1593 247 382 7 17 109 1420 36 19 1101 76 988 1176 678 467 418 563 506 598 507 630 577 554 503 530 498 506 508 ]
G [ 489 486 521 496 545 541 524 521 483 536 473 484 556 494 383 160 71 93 1729 423 19 9 22 211 127 1814 1828 24 268 14 1735 198 760 365 96 239 481 626 558 523 470 483 445 476 450 472 463 497 512 516 ]
T [ 445 432 404 376 395 363 370 444 456 418 459 454 428 502 988 1318 140 90 41 267 22 4 173 445 1056 12 18 75 119 49 39 325 548 209 345 443 406 374 350 368 390 407 466 456 437 476 424 433 467 474 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.01 0.03 0.02 0.01 -0.05 0.00 0.10 -0.01 -0.01 0.17 -0.00 -0.03 0.05 0.00 -0.01 -0.01 0.13 -0.02 0.11 -0.00 -0.02 0.02 0.03 0.02 0.02 0.01 0.00 -0.00 0.00 ]
C [ 0.01 0.03 0.02 0.03 0.02 0.02 -0.01 0.05 0.14 0.03 0.02 0.07 -0.00 0.20 0.12 0.04 0.08 0.03 -0.05 0.03 0.13 0.05 -0.02 0.10 -0.04 0.05 0.06 0.05 0.03 0.03 0.03 0.02 ]
G [ 0.03 0.03 0.03 0.03 0.04 0.03 0.03 -0.00 -0.02 0.04 0.17 0.07 -0.00 -0.00 0.03 0.05 0.02 0.19 0.20 -0.02 0.04 -0.03 0.16 0.03 0.10 0.05 0.00 0.03 0.02 0.03 0.02 0.03 ]
T [ 0.01 0.00 0.00 0.00 -0.00 0.03 0.06 0.10 -0.00 -0.07 -0.04 0.05 -0.03 -0.03 0.07 0.04 0.09 -0.05 0.01 0.01 0.02 -0.01 -0.01 0.02 0.03 -0.02 0.01 -0.00 0.01 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1890

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1504

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_5

Num. of seqlets: 22

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages