Detailed information of deep learning profile BP000597.1

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This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000597.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR892DRK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 -0.00 0.15 0.00 -0.00 0.01 -0.01 -0.00 -0.00 0.10 -0.00 0.13 -0.00 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.09 0.00 -0.00 0.03 -0.00 0.19 0.10 0.00 0.01 0.00 0.00 -0.00 0.07 0.00 -0.00 0.05 -0.00 0.03 0.04 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.13 0.00 0.00 0.00 0.00 -0.00 -0.00 0.15 0.22 -0.00 0.00 0.00 0.15 -0.00 0.03 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 624 600 609 672 601 609 684 618 639 598 632 703 623 531 401 161 201 2209 100 237 2501 7 61 1371 436 55 27 2279 62 2487 110 372 623 405 321 664 654 596 561 698 550 683 455 536 589 560 635 599 544 502 ]
C [ 601 615 672 695 698 670 618 658 615 611 665 556 545 629 358 486 1952 55 102 1304 6 2528 2317 313 429 13 2 134 1917 22 22 1406 72 1411 1659 904 616 570 775 681 869 676 795 768 728 689 699 647 630 709 ]
G [ 684 698 688 658 706 711 696 686 635 749 621 670 745 688 560 267 141 219 2262 602 14 2 22 192 199 2463 2506 41 417 14 2382 289 1106 502 111 312 704 899 725 719 594 637 644 640 656 644 634 709 726 717 ]
T [ 629 625 569 513 533 548 540 576 649 580 620 609 625 690 1219 1624 244 55 74 395 17 1 138 662 1474 7 3 84 142 15 24 471 737 220 447 658 564 473 477 440 525 542 644 594 565 645 570 583 638 610 ]

Hypothetical CWM

   
A [ -0.01 0.01 0.01 0.01 -0.05 -0.02 0.08 -0.02 -0.03 0.15 -0.01 -0.03 0.04 -0.01 -0.04 -0.03 0.11 -0.05 0.13 0.02 -0.03 0.02 0.01 0.00 -0.00 0.01 -0.00 ]
C [ 0.02 0.02 0.02 -0.01 0.03 0.10 0.03 0.01 0.06 -0.04 0.19 0.11 0.04 0.06 0.07 -0.08 0.03 0.09 0.03 -0.04 0.09 -0.06 0.06 0.06 0.04 0.02 0.02 ]
G [ 0.03 0.03 0.02 0.02 0.00 -0.01 0.04 0.14 0.05 -0.01 -0.02 0.00 0.03 0.03 0.15 0.22 -0.05 0.06 -0.04 0.16 0.02 0.10 0.04 -0.02 0.02 0.02 0.02 ]
T [ -0.00 -0.01 0.01 0.04 0.08 0.00 -0.08 -0.03 0.02 -0.03 -0.06 0.04 0.02 0.06 -0.08 -0.02 -0.01 0.01 -0.05 -0.05 0.02 0.03 -0.03 0.01 0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2756

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1044

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 883

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 647

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 35

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages