Detailed information of deep learning profile BP000593.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000593.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR137ZMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 0.11 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.05 -0.00 0.07 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 0.02 0.00 0.14 0.07 -0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 -0.00 0.02 -0.00 0.02 0.02 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.10 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.11 0.12 -0.00 0.00 -0.00 0.10 -0.00 0.02 0.00 -0.00 ]
T [ -0.00 0.00 0.01 0.03 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 140 146 118 144 146 144 149 129 118 139 115 160 150 137 94 30 17 546 6 44 555 1 22 261 147 20 34 429 15 526 53 86 143 106 99 130 153 137 132 169 117 170 140 151 116 135 167 135 140 133 ]
C [ 116 122 157 145 172 145 129 150 111 121 145 118 127 144 76 102 499 5 4 288 0 552 481 83 57 4 2 73 407 11 10 232 39 259 297 170 113 131 171 131 185 116 139 142 132 131 135 127 134 147 ]
G [ 155 144 140 136 123 121 136 134 142 166 125 134 134 136 117 73 8 4 540 155 0 2 3 30 55 529 514 21 94 8 483 123 225 109 50 89 155 183 141 141 126 130 144 136 167 130 121 168 150 143 ]
T [ 144 143 140 130 114 145 141 142 184 129 170 143 144 138 268 350 31 0 5 68 0 0 49 181 296 2 5 32 39 10 9 114 148 81 109 166 134 104 111 114 127 139 132 126 140 159 132 125 131 132 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.06 -0.03 -0.03 0.11 -0.04 -0.03 0.04 -0.02 -0.02 -0.00 0.07 -0.06 0.07 0.00 -0.02 0.01 0.01 0.00 0.01 0.01 -0.00 ]
C [ 0.01 0.01 0.00 -0.02 0.00 0.07 -0.00 0.01 0.05 -0.03 0.14 0.08 0.01 0.05 0.02 -0.04 0.01 0.08 -0.00 -0.02 0.06 -0.03 0.04 0.04 0.03 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 -0.01 0.02 0.10 0.02 -0.01 -0.02 0.01 0.01 -0.01 0.11 0.12 -0.01 0.03 0.01 0.11 0.01 0.05 0.02 -0.01 0.00 0.02 0.02 ]
T [ 0.00 -0.00 0.01 0.03 0.05 -0.00 -0.06 -0.03 0.01 -0.04 -0.02 0.01 0.01 0.05 -0.04 -0.02 -0.02 0.02 -0.04 -0.04 0.01 0.01 -0.02 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 14541

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1441

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1078

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 260

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 54

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages