Detailed information of deep learning profile BP000590.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000590.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BUU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.02 -0.00 -0.01 0.13 -0.00 -0.00 0.02 -0.01 -0.00 0.00 0.16 -0.00 0.19 -0.00 -0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 0.01 0.00 0.14 0.10 -0.00 0.00 0.00 0.00 -0.00 0.12 0.00 -0.00 0.06 -0.00 0.05 0.06 ]
G [ -0.00 0.01 0.05 0.00 0.00 0.00 0.00 -0.00 -0.00 0.22 0.25 -0.00 0.00 -0.00 0.22 -0.00 0.03 0.00 -0.00 ]
T [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 0.07 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 0.00 ]

Frequency matrix

       
A [ 401 408 425 414 358 412 384 417 393 396 457 394 384 352 328 394 681 274 217 1587 10 71 744 187 9 0 1558 11 1633 16 294 355 225 202 428 362 364 411 429 366 490 393 384 408 376 429 396 403 366 379 ]
C [ 408 427 432 403 429 424 417 409 414 432 391 427 498 465 541 441 210 323 563 22 1609 1479 229 100 0 0 46 1363 3 1 899 28 988 1079 556 410 396 430 407 526 365 460 456 433 466 417 386 407 446 429 ]
G [ 427 414 397 428 421 385 421 388 461 389 426 435 404 391 331 325 554 830 348 20 13 13 80 93 1630 1639 2 196 2 1622 145 618 331 47 157 421 492 415 443 383 409 387 397 407 378 397 411 426 436 432 ]
T [ 403 390 385 394 431 418 417 425 371 422 365 383 353 431 439 479 194 212 511 10 7 76 586 1259 0 0 33 69 1 0 301 638 95 311 498 446 387 383 360 364 375 399 402 391 419 396 446 403 391 399 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 0.01 0.05 -0.01 -0.02 0.13 -0.02 -0.01 0.06 -0.01 -0.01 0.01 0.17 -0.10 0.19 0.03 -0.02 0.03 0.02 0.00 0.01 0.00 0.01 0.00 ]
C [ 0.03 0.02 0.03 0.05 0.03 0.04 0.04 -0.01 0.14 0.11 0.02 0.08 -0.02 -0.12 0.02 0.15 0.04 -0.05 0.12 -0.11 0.09 0.09 0.05 0.02 0.02 0.02 ]
G [ 0.03 0.03 0.03 0.00 0.04 0.09 0.04 0.00 -0.01 0.04 0.02 -0.02 0.22 0.25 -0.08 0.04 -0.08 0.23 -0.01 0.11 0.02 -0.06 0.01 0.02 0.02 0.01 ]
T [ 0.00 0.01 0.04 0.02 -0.03 -0.03 0.06 -0.04 -0.00 0.00 0.04 0.09 -0.07 -0.04 -0.02 0.04 -0.08 -0.11 0.02 0.05 -0.04 0.02 0.01 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2634

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 609

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages