JASPAR - REST - BP000589.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000589.1
Cell line/tissue:	Panc1
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BUP
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2077

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.01	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.03	-0.00	0.00	-0.00	0.00	0.00	-0.00	0.00	-0.00	0.07	0.02	0.00	-0.00	]
C [	-0.00	0.00	0.04	-0.00	0.20	0.00	0.00	-0.00	0.24	0.21	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.19	0.00	-0.00	-0.00	0.00	0.00	0.00	]
G [	0.05	0.03	-0.00	0.05	-0.00	0.00	0.10	-0.00	0.00	0.00	0.01	-0.00	0.13	0.23	-0.00	0.03	0.00	-0.00	0.13	0.00	-0.00	-0.00	-0.00	]
T [	-0.00	-0.00	-0.00	-0.01	-0.00	0.16	-0.00	0.10	-0.00	-0.00	-0.01	0.02	-0.00	-0.00	0.21	-0.00	-0.00	0.11	-0.00	-0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	518	498	442	448	568	499	484	530	437	424	374	383	370	448	552	356	195	569	428	13	8	134	75	3	5	1090	527	93	3	2	263	8	8	129	1434	1037	554	540	536	528	484	572	498	434	453	415	417	442	499	530	]
C [	578	603	579	519	518	549	512	523	513	490	560	585	752	587	244	94	399	970	258	1963	6	321	32	2032	2018	152	164	10	3	4	477	2046	48	39	194	440	565	588	534	520	621	512	550	602	561	600	562	555	539	572	]
G [	559	535	540	586	541	580	641	668	555	725	568	656	475	491	732	1375	1162	65	1055	7	12	1601	168	4	4	400	244	1930	2070	3	1183	8	8	1806	364	290	528	450	461	538	496	489	550	508	560	581	544	573	500	480	]
T [	422	441	516	524	450	449	440	356	572	438	575	453	480	551	549	252	321	473	336	94	2051	21	1802	38	50	435	1142	44	1	2068	154	15	2013	103	85	310	430	499	546	491	476	504	479	533	503	481	554	507	539	495	]

Hypothetical CWM

A [	0.01	0.00	0.01	0.01	0.02	-0.03	0.04	0.02	-0.08	-0.08	0.04	-0.00	-0.02	-0.07	0.09	0.04	0.05	-0.02	-0.03	0.05	-0.06	-0.09	0.01	0.09	0.05	0.03	0.00	0.00	]
C [	0.01	0.02	0.01	0.02	-0.03	0.05	0.12	0.01	0.21	-0.02	0.05	-0.01	0.24	0.21	-0.00	0.04	-0.02	-0.02	-0.03	0.07	0.19	0.06	-0.02	-0.00	0.02	0.04	0.03	0.04	]
G [	0.02	0.03	0.02	0.05	0.08	0.07	-0.08	0.12	-0.05	0.04	0.13	0.03	-0.12	-0.00	0.08	0.03	0.14	0.23	-0.07	0.07	0.01	0.04	0.14	0.05	-0.01	0.03	0.02	0.03	]
T [	0.01	0.01	0.01	0.01	0.00	0.02	0.01	-0.01	0.02	0.16	-0.09	0.12	-0.00	0.01	-0.01	0.06	-0.03	-0.04	0.21	-0.02	-0.03	0.11	-0.02	-0.03	0.01	0.02	0.02	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1956

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 353

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 159

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 137

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 27

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3