Detailed information of deep learning profile BP000588.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HL-60 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000588.1
Cell line/tissue: HL-60
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BTF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.13 -0.00 -0.01 0.24 0.00 -0.00 0.03 -0.01 -0.00 -0.00 0.13 -0.00 0.19 -0.00 -0.01 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.14 -0.00 0.00 0.05 0.00 0.27 0.15 -0.00 0.01 0.00 0.00 -0.00 0.11 0.00 -0.00 0.07 -0.00 0.04 0.05 0.01 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.21 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.22 0.27 -0.00 0.00 0.00 0.21 -0.00 0.04 0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.03 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.01 0.04 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 600 629 563 677 604 583 646 581 592 560 569 651 629 524 383 90 109 2385 12 182 2425 3 51 1301 538 79 52 2044 60 2379 151 383 602 383 353 641 618 583 546 691 486 667 425 523 558 535 605 590 540 511 ]
C [ 579 571 685 629 643 636 571 635 576 612 628 529 515 615 299 403 2167 4 7 1362 4 2425 2232 314 426 6 7 227 1810 17 23 1220 113 1272 1520 819 594 566 731 652 840 629 758 726 649 627 678 618 618 658 ]
G [ 631 638 645 642 682 685 696 675 593 700 607 617 687 644 514 249 41 37 2407 601 3 4 12 194 221 2338 2370 61 407 16 2234 358 1074 505 140 317 692 830 697 659 586 606 620 610 648 614 602 684 700 674 ]
T [ 624 596 541 486 505 530 521 543 673 562 630 637 603 651 1238 1692 117 8 8 289 2 2 139 625 1249 11 5 102 157 22 26 473 645 274 421 657 530 455 460 432 522 532 631 575 579 658 549 542 576 591 ]

Hypothetical CWM

   
A [ -0.00 0.02 0.01 0.01 -0.07 -0.00 0.13 -0.04 -0.05 0.24 -0.02 -0.04 0.08 -0.02 -0.00 -0.01 0.15 -0.10 0.20 0.03 -0.03 0.02 0.03 0.00 0.02 0.00 0.00 -0.00 ]
C [ 0.03 0.02 0.02 -0.03 0.04 0.15 0.02 0.01 0.11 -0.07 0.27 0.16 0.04 0.10 0.03 -0.07 0.05 0.16 0.03 -0.05 0.15 -0.09 0.08 0.09 0.05 0.03 0.03 0.03 ]
G [ 0.03 0.03 0.03 0.02 0.02 -0.03 0.07 0.22 0.07 -0.01 -0.03 -0.01 0.06 -0.01 0.23 0.27 -0.04 0.06 0.00 0.22 0.01 0.12 0.05 -0.03 0.02 0.02 0.03 0.02 ]
T [ 0.00 -0.00 0.02 0.06 0.11 -0.02 -0.13 -0.06 0.05 -0.09 -0.06 0.03 0.02 0.10 -0.08 -0.05 -0.02 0.04 -0.13 -0.08 0.01 0.05 -0.04 0.02 0.00 0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 787

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 117

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages