Detailed information of deep learning profile BP000588.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HL-60 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000588.1
Cell line/tissue: HL-60
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BTF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.01 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 0.03 0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.04 -0.00 0.21 0.00 0.00 -0.00 0.27 0.22 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.21 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.01 0.05 0.04 -0.00 0.07 -0.00 0.00 0.11 -0.00 0.00 0.00 0.01 -0.00 0.15 0.27 0.00 0.05 0.00 -0.00 0.14 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.19 -0.00 0.13 -0.00 -0.00 -0.01 0.03 -0.00 0.00 0.24 -0.01 -0.00 0.13 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 591 576 542 549 658 579 575 631 532 522 432 460 455 530 657 421 274 645 473 26 22 157 102 5 11 1249 625 139 2 2 289 8 8 117 1692 1238 651 603 637 630 562 673 543 521 530 505 486 541 596 624 ]
C [ 674 700 684 602 614 648 610 620 606 586 659 697 830 692 317 140 505 1074 358 2234 16 407 61 2370 2338 221 194 12 4 3 601 2407 37 41 249 514 644 687 617 607 700 593 675 696 685 682 642 645 638 631 ]
G [ 658 618 618 678 627 649 726 758 629 840 652 731 566 594 819 1520 1272 113 1220 23 17 1810 227 7 6 426 314 2232 2425 4 1362 7 4 2167 403 299 615 515 529 628 612 576 635 571 636 643 629 685 571 579 ]
T [ 511 540 590 605 535 558 523 425 667 486 691 546 583 618 641 353 383 602 383 151 2379 60 2044 52 79 538 1301 51 3 2425 182 12 2385 109 90 383 524 629 651 569 560 592 581 646 583 604 677 563 629 600 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.01 0.00 0.02 -0.04 0.05 0.01 -0.08 -0.13 0.04 -0.02 -0.05 -0.08 0.10 0.02 0.03 -0.06 -0.09 0.05 -0.06 -0.13 -0.02 0.11 0.06 0.02 -0.00 0.00 ]
C [ 0.02 0.03 0.02 0.02 -0.03 0.05 0.12 0.01 0.22 0.00 0.06 -0.04 0.27 0.23 -0.01 0.06 -0.01 -0.03 -0.01 0.07 0.22 0.07 -0.03 0.02 0.02 0.03 0.03 0.03 ]
G [ 0.03 0.03 0.03 0.05 0.09 0.08 -0.09 0.15 -0.05 0.03 0.16 0.05 -0.07 0.03 0.10 0.04 0.16 0.27 -0.07 0.11 0.01 0.02 0.15 0.04 -0.03 0.02 0.02 0.03 ]
T [ -0.00 0.00 0.00 0.02 0.00 0.03 0.02 -0.03 0.03 0.20 -0.10 0.15 -0.01 -0.00 -0.02 0.08 -0.04 -0.02 0.24 -0.05 -0.04 0.13 -0.00 -0.07 0.01 0.01 0.02 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 787

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 117

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages