JASPAR - REST - BP000586.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000586.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BQS
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2327

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	0.09	-0.00	-0.00	0.18	-0.00	-0.00	0.01	-0.01	-0.00	-0.00	0.09	-0.00	0.15	-0.00	-0.01	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	-0.00	0.00	0.09	0.00	0.00	0.03	0.00	0.21	0.11	-0.00	0.01	0.00	0.00	-0.00	0.10	0.00	0.00	0.06	-0.00	0.03	0.05	0.01	]
G [	0.01	0.00	0.00	0.00	-0.00	0.00	0.17	0.01	0.00	0.00	-0.00	0.00	-0.00	0.17	0.22	0.00	0.00	0.00	0.19	-0.00	0.04	0.01	-0.00	0.00	]
T [	-0.01	-0.00	0.02	0.05	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.03	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.01	-0.00	0.00	-0.00	]

Frequency matrix

A [	562	581	549	596	542	537	609	516	561	528	536	586	567	487	367	149	193	1984	94	204	2296	5	60	1240	400	65	25	2049	25	2285	72	344	528	325	292	608	604	516	503	617	471	601	385	444	499	467	547	525	493	455	]
C [	568	575	668	629	636	624	579	605	570	608	634	562	516	622	356	469	1745	61	117	1256	7	2318	2125	268	424	7	6	161	1835	11	18	1336	62	1357	1576	861	573	546	724	649	817	636	771	728	676	660	669	613	625	640	]
G [	647	640	645	634	674	670	657	666	603	668	598	613	681	631	523	274	136	218	2062	508	11	3	15	210	185	2244	2291	37	344	14	2217	242	1022	450	78	278	637	825	677	646	562	594	594	604	620	584	594	645	664	659	]
T [	550	531	465	468	475	496	482	540	593	523	559	566	563	587	1081	1435	253	64	54	359	13	1	127	609	1318	11	5	80	123	17	20	405	715	195	381	580	513	440	423	415	477	496	577	551	532	616	517	544	545	573	]

Hypothetical CWM

A [	0.00	0.01	0.01	0.01	-0.03	-0.01	0.09	-0.02	-0.04	0.19	-0.03	-0.02	0.04	-0.01	-0.00	0.00	0.11	-0.08	0.15	0.02	-0.02	0.02	0.02	0.00	0.00	-0.00	-0.01	-0.00	]
C [	0.03	0.02	0.03	-0.01	0.03	0.11	0.03	0.02	0.07	-0.06	0.21	0.12	0.02	0.08	0.02	-0.09	0.02	0.13	0.02	-0.04	0.11	-0.07	0.06	0.07	0.05	0.03	0.03	0.03	]
G [	0.03	0.04	0.02	0.03	0.01	-0.02	0.04	0.18	0.06	-0.00	-0.02	0.01	0.05	0.00	0.18	0.22	-0.02	0.04	-0.04	0.19	-0.00	0.10	0.06	-0.04	0.02	0.02	0.03	0.02	]
T [	-0.01	-0.01	0.01	0.04	0.07	0.01	-0.09	-0.07	0.03	-0.04	-0.03	0.03	0.02	0.06	-0.08	-0.04	-0.00	0.03	-0.07	-0.08	0.01	0.04	-0.04	0.02	0.00	0.01	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 924

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 391

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 157

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 130

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3