Detailed information of deep learning profile BP000586.1

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This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000586.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BQS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.05 0.02 -0.00 -0.01 ]
C [ 0.00 -0.00 0.01 0.04 -0.00 0.19 0.00 0.00 0.00 0.22 0.17 -0.00 0.00 -0.00 0.00 0.00 0.01 0.17 0.00 -0.00 0.00 0.00 0.00 0.01 ]
G [ 0.01 0.05 0.03 -0.00 0.06 0.00 0.00 0.10 -0.00 0.00 0.00 0.01 -0.00 0.11 0.21 0.00 0.03 0.00 0.00 0.09 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.15 -0.00 0.09 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.18 -0.00 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 573 545 544 517 616 532 551 577 496 477 415 423 440 513 580 381 195 715 405 20 17 123 80 5 11 1318 609 127 1 13 359 54 64 253 1435 1081 587 563 566 559 523 593 540 482 496 475 468 465 531 550 ]
C [ 659 664 645 594 584 620 604 594 594 562 646 677 825 637 278 78 450 1022 242 2217 14 344 37 2291 2244 185 210 15 3 11 508 2062 218 136 274 523 631 681 613 598 668 603 666 657 670 674 634 645 640 647 ]
G [ 640 625 613 669 660 676 728 771 636 817 649 724 546 573 861 1576 1357 62 1336 18 11 1835 161 6 7 424 268 2125 2318 7 1256 117 61 1745 469 356 622 516 562 634 608 570 605 579 624 636 629 668 575 568 ]
T [ 455 493 525 547 467 499 444 385 601 471 617 503 516 604 608 292 325 528 344 72 2285 25 2049 25 65 400 1240 60 5 2296 204 94 1984 193 149 367 487 567 586 536 528 561 516 609 537 542 596 549 581 562 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 0.02 -0.04 0.04 0.01 -0.08 -0.07 0.03 -0.00 -0.04 -0.08 0.06 0.02 0.03 -0.03 -0.04 0.03 -0.07 -0.09 0.01 0.07 0.04 0.01 -0.01 -0.01 ]
C [ 0.02 0.03 0.02 0.02 -0.04 0.06 0.10 -0.00 0.19 -0.04 0.04 -0.02 0.22 0.18 0.00 0.05 0.01 -0.02 -0.00 0.06 0.18 0.04 -0.02 0.01 0.03 0.02 0.04 0.03 ]
G [ 0.03 0.03 0.03 0.05 0.07 0.06 -0.07 0.11 -0.04 0.02 0.13 0.02 -0.09 0.02 0.08 0.02 0.12 0.21 -0.06 0.07 0.02 0.03 0.11 0.03 -0.01 0.03 0.02 0.03 ]
T [ -0.00 -0.01 -0.00 0.00 0.00 0.02 0.02 -0.02 0.02 0.15 -0.08 0.11 0.00 -0.00 -0.01 0.04 -0.02 -0.03 0.19 -0.04 -0.02 0.09 -0.01 -0.03 0.01 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 924

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 130

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages