JASPAR - REST - BP000583.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000583.1
Cell line/tissue:	SK-N-SH
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BOZ
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 2104

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.01	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	0.03	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.02	0.00	]
C [	-0.00	-0.00	0.00	0.03	-0.00	0.19	-0.00	0.00	-0.00	0.24	0.21	-0.00	-0.00	0.00	0.00	0.00	0.00	0.10	0.00	-0.00	0.00	0.01	]
G [	0.01	0.05	0.04	-0.00	0.06	-0.00	0.00	0.10	-0.00	0.00	0.00	0.01	-0.00	0.10	0.17	0.00	0.02	0.00	0.00	0.05	0.01	-0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.17	-0.00	0.11	-0.00	-0.00	-0.01	0.01	-0.00	-0.00	0.14	-0.01	-0.00	0.05	-0.00	-0.00	-0.00	]

Frequency matrix

A [	544	504	503	474	573	505	482	493	460	429	402	407	423	535	610	348	149	732	331	3	4	112	52	0	0	1418	656	89	3	4	474	116	121	394	851	647	454	536	490	531	469	520	469	460	511	447	440	446	488	541	]
C [	586	588	583	538	497	561	505	522	531	501	552	573	740	584	237	65	409	833	180	2074	1	287	9	2091	2079	130	124	15	3	11	463	1578	371	231	386	564	605	544	552	518	589	544	569	563	567	601	563	564	581	542	]
G [	564	531	500	562	567	569	652	660	529	717	559	632	495	471	757	1441	1285	42	1278	3	0	1687	109	0	0	233	292	1921	2097	9	937	226	146	1157	621	500	588	529	497	555	556	505	568	529	571	564	544	581	516	504	]
T [	410	481	518	530	467	469	465	429	584	457	591	492	446	514	500	250	261	497	315	24	2099	18	1934	13	25	323	1032	79	1	2080	230	184	1466	322	246	393	457	495	565	500	490	535	498	552	455	492	557	513	519	517	]

Hypothetical CWM

A [	-0.00	-0.00	-0.01	0.01	-0.04	0.03	-0.00	-0.08	-0.08	0.04	-0.01	-0.07	-0.10	0.06	0.03	0.01	-0.01	-0.05	0.04	-0.04	-0.05	-0.00	0.05	0.01	0.00	-0.01	-0.00	]
C [	0.03	0.02	0.02	-0.02	0.04	0.10	-0.01	0.19	-0.03	0.04	-0.05	0.24	0.21	0.00	0.03	0.03	-0.02	-0.00	0.04	0.12	0.05	-0.00	0.02	0.04	0.03	0.02	0.03	]
G [	0.02	0.03	0.05	0.08	0.07	-0.07	0.11	-0.03	0.01	0.13	0.02	-0.10	-0.01	0.08	0.02	0.11	0.17	-0.02	0.05	0.03	0.01	0.07	0.03	0.00	0.02	0.02	0.02	]
T [	-0.01	-0.00	-0.00	-0.01	0.02	0.01	-0.01	0.01	0.17	-0.10	0.12	0.02	-0.00	-0.02	0.04	-0.04	-0.05	0.14	-0.04	-0.02	0.06	-0.00	-0.03	-0.00	-0.00	0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3143

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2405

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1509

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 147

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 100

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 49

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3