Detailed information of deep learning profile BP000583.1

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This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000583.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.05 -0.00 -0.01 0.14 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 0.11 -0.00 0.17 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.01 0.05 0.00 0.00 0.02 0.00 0.17 0.10 -0.00 0.01 0.00 0.00 -0.00 0.10 0.00 -0.00 0.06 -0.00 0.04 0.05 0.01 ]
G [ 0.01 0.00 -0.00 0.00 0.10 0.00 0.00 0.00 0.00 -0.00 -0.00 0.21 0.24 -0.00 0.00 -0.00 0.19 -0.00 0.03 0.00 -0.00 -0.00 ]
T [ 0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 517 519 513 557 492 455 552 498 535 490 500 565 495 457 393 246 322 1466 184 230 2080 1 79 1032 323 25 13 1934 18 2099 24 315 497 261 250 500 514 446 492 591 457 584 429 465 469 467 530 518 481 410 ]
C [ 504 516 581 544 564 571 529 568 505 556 555 497 529 588 500 621 1157 146 226 937 9 2097 1921 292 233 0 0 109 1687 0 3 1278 42 1285 1441 757 471 495 632 559 717 529 660 652 569 567 562 500 531 564 ]
G [ 542 581 564 563 601 567 563 569 544 589 518 552 544 605 564 386 231 371 1578 463 11 3 15 124 130 2079 2091 9 287 1 2074 180 833 409 65 237 584 740 573 552 501 531 522 505 561 497 538 583 588 586 ]
T [ 541 488 446 440 447 511 460 469 520 469 531 490 536 454 647 851 394 121 116 474 4 3 89 656 1418 0 0 52 112 4 3 331 732 149 348 610 535 423 407 402 429 460 493 482 505 573 474 503 504 544 ]

Hypothetical CWM

   
A [ -0.01 0.00 -0.00 -0.00 -0.03 -0.00 0.06 -0.02 -0.04 0.14 -0.05 -0.04 0.04 -0.02 -0.00 0.02 0.12 -0.10 0.17 0.01 -0.01 0.01 0.02 -0.01 -0.00 -0.00 -0.01 ]
C [ 0.02 0.02 0.02 0.00 0.03 0.07 0.01 0.03 0.05 -0.02 0.17 0.11 0.02 0.08 -0.01 -0.10 0.02 0.13 0.01 -0.03 0.11 -0.07 0.07 0.08 0.05 0.03 0.02 ]
G [ 0.03 0.02 0.03 0.04 0.02 -0.00 0.05 0.12 0.04 -0.00 -0.02 0.03 0.03 0.00 0.21 0.24 -0.05 0.04 -0.03 0.19 -0.01 0.10 0.04 -0.02 0.02 0.02 0.03 ]
T [ -0.00 -0.01 0.00 0.01 0.05 -0.00 -0.05 -0.04 0.04 -0.05 -0.01 0.01 0.03 0.06 -0.10 -0.07 -0.01 0.04 -0.08 -0.08 -0.00 0.03 -0.04 0.01 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2405

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1509

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 49

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages