JASPAR - REST - BP000582.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000582.1
Cell line/tissue:	PFSK-1
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BOX
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 3850

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.01	0.01	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.04	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.05	0.01	-0.00	-0.00	]
C [	-0.00	-0.00	0.00	0.04	-0.00	0.20	0.00	0.00	-0.00	0.24	0.21	-0.00	-0.00	0.00	0.00	0.00	0.01	0.16	0.00	-0.00	0.00	0.01	0.01	0.01	]
G [	0.01	0.05	0.05	-0.00	0.06	-0.00	0.00	0.12	-0.00	0.00	0.00	0.01	-0.00	0.12	0.22	0.00	0.03	0.00	0.00	0.10	0.00	-0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.01	-0.00	0.17	-0.00	0.10	-0.00	-0.00	-0.01	0.02	-0.00	-0.00	0.17	-0.01	-0.00	0.09	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	954	946	877	867	1007	900	907	938	847	851	791	762	816	931	1059	703	350	1218	723	32	23	213	138	6	13	2369	1121	232	8	28	722	214	224	562	2047	1525	938	944	946	969	899	1015	895	871	922	835	821	848	941	1012	]
C [	1063	1030	1065	922	931	1021	956	964	935	920	1026	1059	1269	1059	474	165	800	1655	457	3650	16	557	62	3778	3756	303	287	25	17	30	902	3002	531	320	540	912	1007	1062	998	993	1077	980	1034	1043	1039	1022	1003	1016	1026	1002	]
G [	1031	983	963	1038	1029	1042	1123	1147	965	1245	1000	1122	914	896	1320	2452	2156	126	1992	24	23	3024	286	8	2	508	484	3434	3815	33	1857	298	217	2510	891	746	1062	899	859	984	964	915	1004	945	1000	1050	995	1080	897	917	]
T [	802	891	945	1023	883	887	864	801	1103	834	1033	907	851	964	997	530	544	851	678	144	3788	56	3364	58	79	670	1958	159	10	3759	369	336	2878	458	372	667	843	945	1047	904	910	940	917	991	889	943	1031	906	986	919	]

Hypothetical CWM

A [	0.00	-0.00	-0.00	0.01	-0.06	0.03	0.00	-0.08	-0.07	0.03	-0.01	-0.05	-0.09	0.08	0.02	0.01	-0.02	-0.05	0.04	-0.05	-0.08	-0.01	0.07	0.02	-0.00	-0.01	-0.00	]
C [	0.02	0.03	0.01	-0.02	0.05	0.12	0.00	0.21	-0.03	0.07	-0.04	0.25	0.21	0.00	0.04	0.03	-0.01	-0.01	0.05	0.17	0.04	-0.01	0.02	0.03	0.03	0.03	0.03	]
G [	0.02	0.03	0.05	0.09	0.09	-0.06	0.13	-0.01	0.00	0.16	0.05	-0.08	0.03	0.09	0.03	0.13	0.22	-0.03	0.07	0.03	0.01	0.12	0.04	0.00	0.02	0.03	0.02	]
T [	-0.00	-0.00	0.00	-0.00	0.02	0.01	-0.02	0.00	0.17	-0.12	0.12	-0.01	-0.00	-0.03	0.05	-0.03	-0.06	0.17	-0.04	-0.05	0.09	-0.03	-0.06	-0.01	0.00	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3220

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 602

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 145

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 127

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 101

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 28

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3