Detailed information of deep learning profile BP000582.1

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This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000582.1
Cell line/tissue: PFSK-1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 -0.01 0.17 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.10 -0.00 0.17 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.10 0.00 0.00 0.03 0.00 0.22 0.12 -0.00 0.01 0.00 0.00 -0.00 0.12 0.00 -0.00 0.06 -0.00 0.05 0.05 0.01 ]
G [ 0.01 0.01 0.01 0.00 -0.00 0.00 0.16 0.01 0.00 0.00 0.00 -0.00 -0.00 0.21 0.24 -0.00 0.00 0.00 0.20 -0.00 0.04 0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 0.01 0.05 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 919 986 906 1031 943 889 991 917 940 910 904 1047 945 843 667 372 458 2878 336 369 3759 10 159 1958 670 79 58 3364 56 3788 144 678 851 544 530 997 964 851 907 1033 834 1103 801 864 887 883 1023 945 891 802 ]
C [ 917 897 1080 995 1050 1000 945 1004 915 964 984 859 899 1062 746 891 2510 217 298 1857 33 3815 3434 484 508 2 8 286 3024 23 24 1992 126 2156 2452 1320 896 914 1122 1000 1245 965 1147 1123 1042 1029 1038 963 983 1031 ]
G [ 1002 1026 1016 1003 1022 1039 1043 1034 980 1077 993 998 1062 1007 912 540 320 531 3002 902 30 17 25 287 303 3756 3778 62 557 16 3650 457 1655 800 165 474 1059 1269 1059 1026 920 935 964 956 1021 931 922 1065 1030 1063 ]
T [ 1012 941 848 821 835 922 871 895 1015 899 969 946 944 938 1525 2047 562 224 214 722 28 8 232 1121 2369 13 6 138 213 23 32 723 1218 350 703 1059 931 816 762 791 851 847 938 907 900 1007 867 877 946 954 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 -0.01 -0.06 -0.03 0.09 -0.05 -0.04 0.17 -0.06 -0.03 0.05 -0.03 -0.00 -0.01 0.12 -0.12 0.17 0.00 -0.02 0.01 0.02 -0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.03 0.02 0.00 0.04 0.12 0.01 0.03 0.07 -0.03 0.22 0.13 0.03 0.09 0.03 -0.08 0.05 0.16 0.00 -0.01 0.13 -0.06 0.09 0.09 0.05 0.03 0.02 ]
G [ 0.03 0.03 0.03 0.03 0.02 -0.01 0.04 0.17 0.05 -0.01 -0.01 0.03 0.04 0.00 0.21 0.25 -0.04 0.07 -0.03 0.21 0.00 0.12 0.05 -0.02 0.01 0.03 0.02 ]
T [ -0.00 -0.01 -0.00 0.02 0.07 -0.01 -0.08 -0.05 0.04 -0.05 -0.02 0.01 0.02 0.08 -0.09 -0.05 -0.01 0.03 -0.07 -0.08 0.00 0.03 -0.06 0.01 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 28

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages