JASPAR - REST - BP000581.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000581.1
Cell line/tissue:	HepG2
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BOT
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2791

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.01	-0.00	-0.00	0.00	0.00	-0.00	0.00	-0.00	0.04	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.06	0.02	0.00	-0.00	]
C [	-0.00	0.00	0.03	-0.00	0.18	-0.00	0.00	-0.00	0.22	0.20	-0.00	0.00	0.00	-0.00	0.00	0.01	0.16	0.00	-0.00	0.00	0.00	0.00	0.01	]
G [	0.05	0.04	-0.00	0.06	-0.00	0.00	0.11	-0.00	0.00	0.00	0.01	-0.00	0.12	0.21	0.00	0.04	0.00	0.00	0.10	0.00	-0.00	0.00	0.00	]
T [	-0.00	0.00	-0.00	-0.00	0.00	0.16	-0.00	0.11	-0.00	-0.00	-0.01	0.02	-0.00	0.00	0.18	-0.01	-0.00	0.09	-0.00	-0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	684	645	655	621	726	647	644	677	605	590	506	519	530	623	713	474	238	877	504	23	21	134	101	8	6	1628	786	162	2	10	436	109	116	322	1682	1259	706	690	668	696	630	726	637	607	615	590	567	604	657	694	]
C [	775	784	763	708	699	742	700	690	696	661	774	813	989	777	320	96	539	1201	327	2637	9	356	47	2719	2722	219	222	24	6	21	650	2377	293	195	314	620	758	777	727	703	807	741	765	766	763	777	777	768	757	750	]
G [	754	736	711	757	756	788	869	914	747	958	762	853	636	672	1024	1879	1609	75	1511	16	13	2280	198	6	6	431	344	2525	2777	17	1475	160	103	2030	595	476	746	647	660	730	715	677	744	696	763	769	742	752	683	683	]
T [	578	626	662	705	610	614	578	510	743	582	749	606	636	719	734	342	405	638	449	115	2748	21	2445	58	57	513	1439	80	6	2743	230	145	2279	244	200	436	581	677	736	662	639	647	645	722	650	655	705	667	694	664	]

Hypothetical CWM

A [	0.00	-0.00	0.00	-0.00	0.02	-0.05	0.04	0.01	-0.06	-0.06	0.04	-0.00	-0.05	-0.10	0.08	0.03	0.02	-0.05	-0.05	0.04	-0.05	-0.08	-0.00	0.08	0.04	0.01	-0.01	-0.00	]
C [	0.02	0.03	0.02	0.02	-0.03	0.04	0.09	0.01	0.19	-0.02	0.05	-0.04	0.23	0.21	-0.00	0.04	0.03	-0.02	-0.02	0.06	0.17	0.04	-0.02	0.01	0.02	0.03	0.03	0.03	]
G [	0.03	0.03	0.03	0.05	0.08	0.08	-0.05	0.11	-0.05	-0.01	0.14	0.04	-0.08	0.02	0.08	0.01	0.13	0.21	-0.04	0.08	0.01	0.01	0.11	0.04	-0.01	0.02	0.02	0.03	]
T [	-0.01	-0.00	0.00	0.00	-0.00	0.02	0.01	-0.01	0.02	0.16	-0.11	0.13	0.02	-0.00	-0.02	0.06	-0.04	-0.02	0.18	-0.05	-0.03	0.10	-0.01	-0.06	0.00	0.01	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1170

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1125

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 278

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 237

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 126

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3