Detailed information of deep learning profile BP000581.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000581.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 -0.01 0.18 0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.11 -0.00 0.16 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.10 0.00 0.00 0.04 0.00 0.21 0.12 -0.00 0.01 0.00 0.00 -0.00 0.11 0.00 -0.00 0.06 -0.00 0.04 0.05 ]
G [ 0.01 0.00 0.00 0.00 -0.00 0.00 0.16 0.01 0.00 -0.00 0.00 0.00 -0.00 0.20 0.22 -0.00 0.00 -0.00 0.18 -0.00 0.03 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 664 694 667 705 655 650 722 645 647 639 662 736 677 581 436 200 244 2279 145 230 2743 6 80 1439 513 57 58 2445 21 2748 115 449 638 405 342 734 719 636 606 749 582 743 510 578 614 610 705 662 626 578 ]
C [ 683 683 752 742 769 763 696 744 677 715 730 660 647 746 476 595 2030 103 160 1475 17 2777 2525 344 431 6 6 198 2280 13 16 1511 75 1609 1879 1024 672 636 853 762 958 747 914 869 788 756 757 711 736 754 ]
G [ 750 757 768 777 777 763 766 765 741 807 703 727 777 758 620 314 195 293 2377 650 21 6 24 222 219 2722 2719 47 356 9 2637 327 1201 539 96 320 777 989 813 774 661 696 690 700 742 699 708 763 784 775 ]
T [ 694 657 604 567 590 615 607 637 726 630 696 668 690 706 1259 1682 322 116 109 436 10 2 162 786 1628 6 8 101 134 21 23 504 877 238 474 713 623 530 519 506 590 605 677 644 647 726 621 655 645 684 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.06 -0.01 0.10 -0.03 -0.05 0.18 -0.02 -0.04 0.06 -0.02 -0.00 0.02 0.13 -0.11 0.16 0.02 -0.01 0.01 0.02 -0.00 0.00 0.00 -0.00 -0.01 ]
C [ 0.03 0.02 0.02 -0.01 0.04 0.11 0.01 0.01 0.08 -0.04 0.21 0.13 0.01 0.08 0.02 -0.08 0.04 0.14 -0.01 -0.05 0.11 -0.05 0.08 0.08 0.05 0.03 0.03 0.03 ]
G [ 0.03 0.03 0.03 0.02 0.01 -0.02 0.04 0.17 0.06 -0.02 -0.02 0.03 0.04 -0.00 0.21 0.23 -0.04 0.05 -0.02 0.19 0.01 0.09 0.04 -0.03 0.02 0.02 0.03 0.02 ]
T [ -0.00 -0.01 0.01 0.04 0.08 -0.00 -0.08 -0.05 0.04 -0.05 -0.05 0.02 0.03 0.08 -0.10 -0.05 -0.00 0.04 -0.06 -0.06 0.01 0.04 -0.05 0.02 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 126

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages