JASPAR - REST - BP000580.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000580.1
Cell line/tissue:	K562
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BMW
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 3329

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.01	-0.00	-0.00	-0.00	0.00	-0.00	0.00	-0.00	0.05	0.00	-0.00	0.00	-0.00	0.01	-0.00	-0.00	-0.00	0.07	0.02	0.00	-0.00	]
C [	-0.00	0.00	0.04	-0.00	0.20	-0.00	0.00	-0.00	0.28	0.23	-0.00	-0.00	0.00	0.00	0.00	0.00	0.18	0.00	-0.00	0.00	0.01	0.00	0.01	]
G [	0.06	0.04	-0.00	0.07	-0.00	0.00	0.12	-0.00	0.00	0.00	0.01	-0.00	0.13	0.25	0.00	0.03	0.00	0.00	0.11	0.00	-0.00	0.00	0.00	]
T [	-0.00	0.00	-0.00	-0.01	-0.00	0.18	-0.00	0.15	-0.00	-0.00	-0.01	0.03	-0.00	-0.00	0.23	-0.01	-0.00	0.11	-0.00	-0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	793	777	762	753	869	789	768	777	731	737	646	646	654	770	905	575	296	969	603	36	27	184	114	5	12	2033	946	200	18	18	552	160	132	402	1864	1406	810	797	796	804	745	868	744	747	732	739	683	714	778	805	]
C [	939	920	926	853	838	884	834	849	829	812	932	938	1169	936	409	164	682	1401	445	3107	36	490	53	3296	3244	247	254	48	11	17	822	2716	441	256	450	788	905	933	874	845	975	845	914	906	898	900	889	901	943	890	]
G [	905	883	883	917	887	927	1017	1036	874	1107	875	994	768	804	1150	2140	1830	140	1770	29	32	2600	254	4	4	483	474	2982	3296	16	1628	221	176	2315	748	589	904	785	765	877	844	814	884	835	904	894	882	904	804	812	]
T [	692	749	758	806	735	729	710	667	895	673	876	751	738	819	865	450	521	819	511	157	3234	55	2908	24	69	566	1655	99	4	3278	327	232	2580	356	267	546	710	814	894	803	765	802	787	841	795	796	875	810	804	822	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	0.00	0.02	-0.05	0.03	0.01	-0.10	-0.10	0.04	-0.02	-0.05	-0.11	0.10	0.04	0.02	-0.02	-0.08	0.05	-0.06	-0.11	-0.01	0.09	0.04	0.01	-0.01	-0.01	]
C [	0.02	0.02	0.02	0.01	-0.03	0.04	0.10	-0.00	0.21	-0.02	0.03	-0.06	0.28	0.23	-0.03	0.02	0.02	-0.04	-0.06	0.05	0.19	0.05	-0.03	-0.00	0.03	0.03	0.03	0.03	]
G [	0.03	0.03	0.03	0.05	0.09	0.08	-0.06	0.13	-0.03	0.01	0.15	0.02	-0.12	0.01	0.08	0.02	0.14	0.25	-0.04	0.07	0.01	-0.00	0.13	0.03	-0.02	0.02	0.02	0.02	]
T [	-0.00	0.00	-0.00	0.01	-0.01	0.03	0.02	-0.03	0.02	0.19	-0.10	0.16	-0.02	-0.01	-0.02	0.07	-0.04	-0.09	0.23	-0.05	-0.05	0.12	-0.02	-0.06	0.01	0.01	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 7041

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2525

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 720

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 344

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 207

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 168

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 121

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3