Detailed information of deep learning profile BP000580.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000580.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BMW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 -0.01 0.23 -0.00 -0.00 0.03 -0.01 -0.00 -0.00 0.15 -0.00 0.18 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.11 0.00 0.00 0.03 0.00 0.25 0.13 -0.00 0.01 0.00 0.00 -0.00 0.12 0.00 -0.00 0.07 -0.00 0.04 0.06 ]
G [ 0.01 0.00 0.01 0.00 -0.00 0.00 0.18 0.00 0.00 0.00 0.00 -0.00 -0.00 0.23 0.28 -0.00 0.00 -0.00 0.20 -0.00 0.04 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.07 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.05 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 822 804 810 875 796 795 841 787 802 765 803 894 814 710 546 267 356 2580 232 327 3278 4 99 1655 566 69 24 2908 55 3234 157 511 819 521 450 865 819 738 751 876 673 895 667 710 729 735 806 758 749 692 ]
C [ 812 804 904 882 894 904 835 884 814 844 877 765 785 904 589 748 2315 176 221 1628 16 3296 2982 474 483 4 4 254 2600 32 29 1770 140 1830 2140 1150 804 768 994 875 1107 874 1036 1017 927 887 917 883 883 905 ]
G [ 890 943 901 889 900 898 906 914 845 975 845 874 933 905 788 450 256 441 2716 822 17 11 48 254 247 3244 3296 53 490 36 3107 445 1401 682 164 409 936 1169 938 932 812 829 849 834 884 838 853 926 920 939 ]
T [ 805 778 714 683 739 732 747 744 868 745 804 796 797 810 1406 1864 402 132 160 552 18 18 200 946 2033 12 5 114 184 27 36 603 969 296 575 905 770 654 646 646 737 731 777 768 789 869 753 762 777 793 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.01 -0.06 -0.02 0.12 -0.05 -0.05 0.23 -0.09 -0.04 0.07 -0.02 -0.01 -0.02 0.16 -0.10 0.19 0.02 -0.03 0.02 0.03 -0.01 0.01 -0.00 0.00 -0.00 ]
C [ 0.02 0.02 0.02 -0.02 0.03 0.13 -0.00 0.01 0.07 -0.04 0.25 0.14 0.02 0.08 0.01 -0.12 0.02 0.15 0.01 -0.03 0.13 -0.06 0.08 0.09 0.05 0.03 0.03 0.03 ]
G [ 0.03 0.03 0.03 0.03 -0.00 -0.03 0.05 0.19 0.05 -0.06 -0.04 0.02 0.02 -0.03 0.23 0.28 -0.06 0.03 -0.02 0.21 -0.00 0.10 0.04 -0.03 0.01 0.02 0.02 0.02 ]
T [ -0.01 -0.01 0.01 0.04 0.09 -0.01 -0.11 -0.06 0.05 -0.08 -0.02 0.02 0.04 0.10 -0.11 -0.05 -0.02 0.04 -0.10 -0.10 0.01 0.03 -0.05 0.02 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 7041

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2525

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 720

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 344

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 121

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages