Detailed information of deep learning profile BP000579.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000579.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BMN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.07 -0.00 -0.01 0.17 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.15 -0.00 0.18 -0.00 -0.01 0.00 0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.07 0.00 0.00 0.02 0.00 0.20 0.11 -0.00 0.00 0.00 -0.00 -0.00 0.11 0.00 -0.00 0.08 -0.00 0.04 0.07 0.01 ]
G [ 0.00 0.00 -0.00 0.00 0.13 0.01 0.00 -0.00 0.00 -0.00 -0.00 0.24 0.27 -0.00 0.00 -0.00 0.23 -0.00 0.04 0.00 -0.00 -0.00 ]
T [ 0.01 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 722 763 726 814 709 698 771 709 731 722 713 833 738 688 565 382 466 1988 306 345 2861 20 148 1397 439 37 11 2738 43 2955 32 417 807 437 358 784 715 663 667 835 665 875 616 714 717 663 761 713 700 630 ]
C [ 700 719 801 750 789 801 732 789 690 732 759 736 753 854 688 833 1620 218 298 1241 34 2926 2586 406 319 2 1 138 2301 4 6 1810 83 1687 1935 996 693 713 839 765 975 702 913 875 818 819 800 734 773 773 ]
G [ 765 788 763 790 803 762 774 789 758 843 762 724 752 785 777 511 336 565 2166 709 47 16 37 228 201 2934 2961 21 490 8 2934 251 1129 601 123 348 802 960 807 790 697 726 733 694 766 698 735 818 793 797 ]
T [ 788 705 685 621 674 714 698 688 796 678 741 682 732 648 945 1249 553 204 205 680 33 13 204 944 2016 2 2 78 141 8 3 497 956 250 559 847 765 639 662 585 638 672 713 692 674 795 679 710 709 775 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.05 -0.01 0.08 -0.02 -0.04 0.17 -0.05 -0.03 0.06 -0.02 -0.02 -0.03 0.17 -0.09 0.18 0.00 -0.02 0.03 0.03 -0.01 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.02 -0.01 0.02 0.09 0.01 0.02 0.05 -0.04 0.20 0.12 0.02 0.08 0.01 -0.12 0.02 0.15 0.01 -0.08 0.14 -0.09 0.08 0.10 0.05 0.03 0.02 0.02 ]
G [ 0.02 0.02 0.02 0.02 0.02 -0.02 0.04 0.15 0.05 -0.02 -0.03 0.01 0.04 -0.02 0.24 0.27 -0.08 0.04 -0.04 0.23 -0.02 0.11 0.04 -0.04 0.01 0.02 0.02 0.02 ]
T [ -0.00 -0.01 0.00 0.03 0.07 0.00 -0.07 -0.05 0.05 -0.05 -0.01 0.01 0.02 0.09 -0.10 -0.02 -0.02 0.03 -0.08 -0.06 0.01 0.03 -0.05 0.02 0.01 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2754

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1002

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 254

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 101

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages